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Vertebral body segmentation with GrowCut: Initial experience, workflow and practical application



Jan Egger , Christopher Nimsky , Xiaojun Chen

* SAGE Open Medicine, Volume 5, pp. 1-10, Nov. 2017 
* 10 pages 

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Cellular Automata Segmentation of the Boundary between the Compacta of Vertebral Bodies and Surrounding Structures



Jan Egger , Christopher Nimsky

* SPIE Medical Imaging Conference 2016, Paper 9787-52 
* 6 pages, 5 figures, 1 table, 42 references 

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Preoperative Volume Determination for Pituitary Adenoma



Dzenan Zukic , Jan Egger , Miriam H. A. Bauer , Daniela Kuhnt , Barbara Carl , Bernd Freisleben , Andreas Kolb , Christopher Nimsky

* 7 pages, 6 figures, 1 table, 16 references in Proc. SPIE 7963, Medical Imaging 2011: Computer-Aided Diagnosis, 79632T (9 March 2011). arXiv admin note: text overlap with arXiv:1103.1778 

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Cube-Cut: Vertebral Body Segmentation in MRI-Data through Cubic-Shaped Divergences



Robert Schwarzenberg , Bernd Freisleben , Christopher Nimsky , Jan Egger

* 23 figures, 2 tables, 43 references, PLoS ONE 9(4): e93389 

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A Ray-based Approach for Boundary Estimation of Fiber Bundles Derived from Diffusion Tensor Imaging



Miriam H. A. Bauer , Sebastiano Barbieri , Jan Klein , Jan Egger , Daniela Kuhnt , Bernd Freisleben , Horst K. Hahn , Christopher Nimsky

* Int J CARS, Vol. 5, Suppl. 1, pp. 47-48, Springer Press, June 2010 
* 5 pages, 2 figures, 7 references 

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Determination, Calculation and Representation of the Upper and Lower Sealing Zones During Virtual Stenting of Aneurysms



Jan Egger , Miriam H. A. Bauer , Stefan Großkopf , Christina Biermann , Bernd Freisleben , Christopher Nimsky

* Int J CARS, Vol. 5, Suppl. 1, pp. 13-14, Springer Press, June 2010 
* 4 pages, 2 figures, 10 references 

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GBM Volumetry using the 3D Slicer Medical Image Computing Platform



Jan Egger , Tina Kapur , Andriy Fedorov , Steve Pieper , James V. Miller , Harini Veeraraghavan , Bernd Freisleben , Alexandra Golby , Christopher Nimsky , Ron Kikinis

* Sci. Rep. 3, 1364, 2013 
* 7 pages, 6 figures, 2 tables, 1 equation, 43 references 

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Pituitary Adenoma Volumetry with 3D Slicer



Jan Egger , Tina Kapur , Christopher Nimsky , Ron Kikinis

* (2012) PLoS ONE 7(12): e51788 
* 7 pages, 5 figures, 2 tables, 30 references 

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Template-Cut: A Pattern-Based Segmentation Paradigm



Jan Egger , Bernd Freisleben , Christopher Nimsky , Tina Kapur

* J. Egger, B. Freisleben, C. Nimsky, T. Kapur. Template-Cut: A Pattern-Based Segmentation Paradigm. Nature - Scientific Reports, Nature Publishing Group (NPG), 2(420), 2012 
* 8 pages, 6 figures, 3 tables, 6 equations, 51 references 

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Square-Cut: A Segmentation Algorithm on the Basis of a Rectangle Shape



Jan Egger , Tina Kapur , Thomas Dukatz , Malgorzata Kolodziej , Dzenan Zukic , Bernd Freisleben , Christopher Nimsky

* Egger J, Kapur T, Dukatz T, Kolodziej M, Zukic D, et al. (2012) Square-Cut: A Segmentation Algorithm on the Basis of a Rectangle Shape. PLoS ONE 7(2): e31064 
* 13 pages, 17 figures, 2 tables, 3 equations, 42 references 

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