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Vertebral body segmentation with GrowCut: Initial experience, workflow and practical application


Nov 13, 2017
Jan Egger, Christopher Nimsky, Xiaojun Chen

* SAGE Open Medicine, Volume 5, pp. 1-10, Nov. 2017 
* 10 pages 

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Cellular Automata Segmentation of the Boundary between the Compacta of Vertebral Bodies and Surrounding Structures


Mar 03, 2016
Jan Egger, Christopher Nimsky

* SPIE Medical Imaging Conference 2016, Paper 9787-52 
* 6 pages, 5 figures, 1 table, 42 references 

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Preoperative Volume Determination for Pituitary Adenoma


Feb 05, 2016
Dzenan Zukic, Jan Egger, Miriam H. A. Bauer, Daniela Kuhnt, Barbara Carl, Bernd Freisleben, Andreas Kolb, Christopher Nimsky

* 7 pages, 6 figures, 1 table, 16 references in Proc. SPIE 7963, Medical Imaging 2011: Computer-Aided Diagnosis, 79632T (9 March 2011). arXiv admin note: text overlap with arXiv:1103.1778 

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Cube-Cut: Vertebral Body Segmentation in MRI-Data through Cubic-Shaped Divergences


Jul 22, 2014
Robert Schwarzenberg, Bernd Freisleben, Christopher Nimsky, Jan Egger

* 23 figures, 2 tables, 43 references, PLoS ONE 9(4): e93389 

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A Ray-based Approach for Boundary Estimation of Fiber Bundles Derived from Diffusion Tensor Imaging


Oct 23, 2013
Miriam H. A. Bauer, Sebastiano Barbieri, Jan Klein, Jan Egger, Daniela Kuhnt, Bernd Freisleben, Horst K. Hahn, Christopher Nimsky

* Int J CARS, Vol. 5, Suppl. 1, pp. 47-48, Springer Press, June 2010 
* 5 pages, 2 figures, 7 references 

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Determination, Calculation and Representation of the Upper and Lower Sealing Zones During Virtual Stenting of Aneurysms


Oct 21, 2013
Jan Egger, Miriam H. A. Bauer, Stefan Großkopf, Christina Biermann, Bernd Freisleben, Christopher Nimsky

* Int J CARS, Vol. 5, Suppl. 1, pp. 13-14, Springer Press, June 2010 
* 4 pages, 2 figures, 10 references 

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GBM Volumetry using the 3D Slicer Medical Image Computing Platform


Mar 05, 2013
Jan Egger, Tina Kapur, Andriy Fedorov, Steve Pieper, James V. Miller, Harini Veeraraghavan, Bernd Freisleben, Alexandra Golby, Christopher Nimsky, Ron Kikinis

* Sci. Rep. 3, 1364, 2013 
* 7 pages, 6 figures, 2 tables, 1 equation, 43 references 

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Pituitary Adenoma Volumetry with 3D Slicer


Dec 12, 2012
Jan Egger, Tina Kapur, Christopher Nimsky, Ron Kikinis

* (2012) PLoS ONE 7(12): e51788 
* 7 pages, 5 figures, 2 tables, 30 references 

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Template-Cut: A Pattern-Based Segmentation Paradigm


May 30, 2012
Jan Egger, Bernd Freisleben, Christopher Nimsky, Tina Kapur

* J. Egger, B. Freisleben, C. Nimsky, T. Kapur. Template-Cut: A Pattern-Based Segmentation Paradigm. Nature - Scientific Reports, Nature Publishing Group (NPG), 2(420), 2012 
* 8 pages, 6 figures, 3 tables, 6 equations, 51 references 

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Square-Cut: A Segmentation Algorithm on the Basis of a Rectangle Shape


Mar 13, 2012
Jan Egger, Tina Kapur, Thomas Dukatz, Malgorzata Kolodziej, Dzenan Zukic, Bernd Freisleben, Christopher Nimsky

* Egger J, Kapur T, Dukatz T, Kolodziej M, Zukic D, et al. (2012) Square-Cut: A Segmentation Algorithm on the Basis of a Rectangle Shape. PLoS ONE 7(2): e31064 
* 13 pages, 17 figures, 2 tables, 3 equations, 42 references 

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Benchmarking the Quality of Diffusion-Weighted Images


May 09, 2011
Jan Klein, Sebastiano Barbieri, Miriam H. A. Bauer, Christopher Nimsky, Horst K. Hahn


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A Comparison of Two Human Brain Tumor Segmentation Methods for MRI Data


Mar 10, 2011
Jan Egger, Dženan Zukić, Miriam H. A. Bauer, Daniela Kuhnt, Barbara Carl, Bernd Freisleben, Andreas Kolb, Christopher Nimsky

* 4 pages, 5 figures, Proc. of the 6th Russian-Bavarian Conference on Bio-Medical Engineering 

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Ray-Based and Graph-Based Methods for Fiber Bundle Boundary Estimation


Mar 10, 2011
Miriam H. A. Bauer, Jan Egger, Daniela Kuhnt, Sebastiano Barbieri, Jan Klein, Horst K. Hahn, Bernd Freisleben, Christopher Nimsky

* 4 pages, 6 figures, BIOSIGNAL, Berlin, 2010 

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A Semi-Automatic Graph-Based Approach for Determining the Boundary of Eloquent Fiber Bundles in the Human Brain


Mar 08, 2011
Miriam H. A. Bauer, Jan Egger, Daniela Kuhnt, Sebastiano Barbieri, Jan Klein, Horst K. Hahn, Bernd Freisleben, Christopher Nimsky

* 4 pages, 3 figures, BMT 2010, Rostock 

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Evaluation of a Novel Approach for Automatic Volume Determination of Glioblastomas Based on Several Manual Expert Segmentations


Mar 08, 2011
Jan Egger, Miriam H. A. Bauer, Daniela Kuhnt, Barbara Carl, Christoph Kappus, Bernd Freisleben, Christopher Nimsky

* 4 pages, 4 figures, BMT 2010, Rostock 

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