SPARQL-LLM: Real-Time SPARQL Query Generation from Natural Language Questions

The advent of large language models is contributing to the emergence of novel approaches that promise to better tackle the challenge of generating structured queries, such as SPARQL queries, from natural language. However, these new approaches mostly focus on response accuracy over a single source while ignoring other evaluation criteria, such as federated query capability over distributed data stores, as well as runtime and cost to generate SPARQL queries. Consequently, they are often not production-ready or easy to deploy over (potentially federated) knowledge graphs with good accuracy. To mitigate these issues, in this paper, we extend our previous work and describe and systematically evaluate SPARQL-LLM, an open-source and triplestore-agnostic approach, powered by lightweight metadata, that generates SPARQL queries from natural language text. First, we describe its architecture, which consists of dedicated components for metadata indexing, prompt building, and query generation and execution. Then, we evaluate it based on a state-of-the-art challenge with multilingual questions, and a collection of questions from three of the most prevalent knowledge graphs within the field of bioinformatics. Our results demonstrate a substantial increase of 24% in the F1 Score on the state-of-the-art challenge, adaptability to high-resource languages such as English and Spanish, as well as ability to form complex and federated bioinformatics queries. Furthermore, we show that SPARQL-LLM is up to 36x faster than other systems participating in the challenge, while costing a maximum of $0.01 per question, making it suitable for real-time, low-cost text-to-SPARQL applications. One such application deployed over real-world decentralized knowledge graphs can be found at https://www.expasy.org/chat.

On the Potential of Artificial Intelligence Chatbots for Data Exploration of Federated Bioinformatics Knowledge Graphs

In this paper, we present work in progress on the role of artificial intelligence (AI) chatbots, such as ChatGPT, in facilitating data access to federated knowledge graphs. In particular, we provide examples from the field of bioinformatics, to illustrate the potential use of Conversational AI to describe datasets, as well as generate and explain (federated) queries across datasets for the benefit of domain experts.