Human Biophysics as Network Weights: Conditional Generative Models for Ultra-fast Simulation

Simulations of biophysical systems have provided a huge contribution to our fundamental understanding of human physiology and remain a central pillar for developments in medical devices and human machine interfaces. However, despite their successes, such simulations usually rely on highly computationally expensive numerical modelling, which is often inefficient to adapt to new simulation parameters. This limits their use in dynamic models of human behavior, for example in modelling the electric fields generated by muscles in a moving arm. We propose the alternative approach to use conditional generative models, which can learn complex relationships between the underlying generative conditions whilst remaining inexpensive to sample from. As a demonstration of this concept, we present BioMime, a hybrid architecture that combines elements of deep latent variable models and conditional adversarial training to construct a generative model that can both transform existing data samples to reflect new modelling assumptions and sample new data from a conditioned distribution. We demonstrate that BioMime can learn to accurately mimic a complex numerical model of human muscle biophysics and then use this knowledge to continuously sample from a dynamically changing system in real-time. We argue that transfer learning approaches with conditional generative models are a viable solution for dynamic simulation with any numerical model.

Deep Metric Learning with Locality Sensitive Angular Loss for Self-Correcting Source Separation of Neural Spiking Signals

Neurophysiological time series, such as electromyographic signal and intracortical recordings, are typically composed of many individual spiking sources, the recovery of which can give fundamental insights into the biological system of interest or provide neural information for man-machine interfaces. For this reason, source separation algorithms have become an increasingly important tool in neuroscience and neuroengineering. However, in noisy or highly multivariate recordings these decomposition techniques often make a large number of errors, which degrades human-machine interfacing applications and often requires costly post-hoc manual cleaning of the output label set of spike timestamps. To address both the need for automated post-hoc cleaning and robust separation filters we propose a methodology based on deep metric learning, using a novel loss function which maintains intra-class variance, creating a rich embedding space suitable for both label cleaning and the discovery of new activations. We then validate this method with an artificially corrupted label set based on source-separated high-density surface electromyography recordings, recovering the original timestamps even in extreme degrees of feature and class-dependent label noise. This approach enables a neural network to learn to accurately decode neurophysiological time series using any imperfect method of labelling the signal.