Toward an AI Reasoning-Enabled System for Patient-Clinical Trial Matching

Screening patients for clinical trial eligibility remains a manual, time-consuming, and resource-intensive process. We present a secure, scalable proof-of-concept system for Artificial Intelligence (AI)-augmented patient-trial matching that addresses key implementation challenges: integrating heterogeneous electronic health record (EHR) data, facilitating expert review, and maintaining rigorous security standards. Leveraging open-source, reasoning-enabled large language models (LLMs), the system moves beyond binary classification to generate structured eligibility assessments with interpretable reasoning chains that support human-in-the-loop review. This decision support tool represents eligibility as a dynamic state rather than a fixed determination, identifying matches when available and offering actionable recommendations that could render a patient eligible in the future. The system aims to reduce coordinator burden, intelligently broaden the set of trials considered for each patient and guarantee comprehensive auditability of all AI-generated outputs.

Bridging the Clinical Expertise Gap: Development of a Web-Based Platform for Accessible Time Series Forecasting and Analysis

Time series forecasting has applications across domains and industries, especially in healthcare, but the technical expertise required to analyze data, build models, and interpret results can be a barrier to using these techniques. This article presents a web platform that makes the process of analyzing and plotting data, training forecasting models, and interpreting and viewing results accessible to researchers and clinicians. Users can upload data and generate plots to showcase their variables and the relationships between them. The platform supports multiple forecasting models and training techniques which are highly customizable according to the user's needs. Additionally, recommendations and explanations can be generated from a large language model that can help the user choose appropriate parameters for their data and understand the results for each model. The goal is to integrate this platform into learning health systems for continuous data collection and inference from clinical pipelines.

Forecasting Opioid Incidents for Rapid Actionable Data for Opioid Response in Kentucky

We present efforts in the fields of machine learning and time series forecasting to accurately predict counts of future opioid overdose incidents recorded by Emergency Medical Services (EMS) in the state of Kentucky. Forecasts are useful to state government agencies to properly prepare and distribute resources related to opioid overdoses effectively. Our approach uses county and district level aggregations of EMS opioid overdose encounters and forecasts future counts for each month. A variety of additional covariates were tested to determine their impact on the model's performance. Models with different levels of complexity were evaluated to optimize training time and accuracy. Our results show that when special precautions are taken to address data sparsity, useful predictions can be generated with limited error by utilizing yearly trends and covariance with additional data sources.

CLASSify: A Web-Based Tool for Machine Learning

Machine learning classification problems are widespread in bioinformatics, but the technical knowledge required to perform model training, optimization, and inference can prevent researchers from utilizing this technology. This article presents an automated tool for machine learning classification problems to simplify the process of training models and producing results while providing informative visualizations and insights into the data. This tool supports both binary and multiclass classification problems, and it provides access to a variety of models and methods. Synthetic data can be generated within the interface to fill missing values, balance class labels, or generate entirely new datasets. It also provides support for feature evaluation and generates explainability scores to indicate which features influence the output the most. We present CLASSify, an open-source tool for simplifying the user experience of solving classification problems without the need for knowledge of machine learning.