This study introduces RUMAA, a transformer-based framework for music performance analysis that unifies score-to-performance alignment, score-informed transcription, and mistake detection in a near end-to-end manner. Unlike prior methods addressing these tasks separately, RUMAA integrates them using pre-trained score and audio encoders and a novel tri-stream decoder capturing task interdependencies through proxy tasks. It aligns human-readable MusicXML scores with repeat symbols to full-length performance audio, overcoming traditional MIDI-based methods that rely on manually unfolded score-MIDI data with pre-specified repeat structures. RUMAA matches state-of-the-art alignment methods on non-repeated scores and outperforms them on scores with repeats in a public piano music dataset, while also delivering promising transcription and mistake detection results.