LemonHarness Technical Report

As large language model (LLM) agents are applied to longer tasks, they increasingly modify workspace state across multiple rounds of iteration. However, agents typically observe only tool outputs and log fragments, while the actual state changes occur in the file system. Without explicit workspace boundaries, state-changing operations such as file writes and temporary artifact generation may scatter changes across paths. Over time, these weakly constrained changes accumulate, making states such as modified files difficult to track. This paper presents LemonHarness, an integrated execution framework for long-horizon agents. LemonHarness establishes an explicit execution boundary by constraining state-changing operations within a clearly defined workspace and bringing model invocation, tool execution, and rule knowledge within a single controlled boundary. State-changing operations, including file writes, dependency installation, and temporary artifact creation, are executed through structured tool interfaces, with execution feedback recorded as observations available to subsequent model decisions. The system also introduces a reusable rule knowledge base, which turns recurring execution rules and acceptance criteria into runtime knowledge. LemonHarness further adds a time-aware execution mechanism that exposes elapsed and remaining budget to the model, so it can rebalance exploration, implementation, and validation effort as time pressure shifts and avoid timeouts from long waits or excessive verification. On Terminal-Bench 2.0, LemonHarness_GPT-5.3-CodeX reached 84.49% accuracy over 445 trials; pairing the same framework with the stronger GPT-5.5 backbone raised the average accuracy to 86.52% across five jobs. The results suggest that a unified runtime boundary, callable rule knowledge, and time-aware execution can improve the stability of long-horizon agent execution.

From Brewing to Resolution: Tracing the Internal Lifecycle of Code Reasoning in LLMs

Standard accuracy metrics cannot explain why LLMs handle variable tracking but fail on semantically equivalent loops. We study an internal lifecycle of code reasoning in which models first brew the answer, making it linearly recoverable many layers before it becomes self-decodable, and then diverge into one of four resolution outcomes: Resolved, Overprocessed, Misresolved, or Unresolved. Understanding this lifecycle matters because similar task accuracies can mask fundamentally different failure modes that surface-level evaluation cannot detect. We introduce a dual diagnostic framework pairing layer-wise linear probing with Context-Stripped Decoding (CSD) and apply it to six code-reasoning task families across 16 models spanning Qwen, Llama, and DeepSeek architectures. All four outcomes carry substantial mass in every task family: overall Resolved is only 41.5%, with multiple tasks below 30%. Controlled sweeps over structure, depth, and operators expose task-specific failure bottlenecks: Function Call Resolved plunges from 61.1% to 2.5% as call depth increases from one to three. Across architectures and scales, the brewing scaffold remains stable, with normalized brewing duration 24-42% across all 16 models, while resolution success varies with capability. This indicates that the scaffold is a stable empirical regularity across the tested decoder-only Transformer families, whereas resolution success covaries with capability, scale, and training. Code: https://github.com/euyis1019/llm-brewing

Zero-Forgetting CISS via Dual-Phase Cognitive Cascades

Continual semantic segmentation (CSS) is a cornerstone task in computer vision that enables a large number of downstream applications, but faces the catastrophic forgetting challenge. In conventional class-incremental semantic segmentation (CISS) frameworks using Softmax-based classification heads, catastrophic forgetting originates from Catastrophic forgetting and task affiliation probability. We formulate these problems and provide a theoretical analysis to more deeply understand the limitations in existing CISS methods, particularly Strict Parameter Isolation (SPI). To address these challenges, we follow a dual-phase intuition from human annotators, and introduce Cognitive Cascade Segmentation (CogCaS), a novel dual-phase cascade formulation for CSS tasks in the CISS setting. By decoupling the task into class-existence detection and class-specific segmentation, CogCaS enables more effective continual learning, preserving previously learned knowledge while incorporating new classes. Using two benchmark datasets PASCAL VOC 2012 and ADE20K, we have shown significant improvements in a variety of challenging scenarios, particularly those with long sequence of incremental tasks, when compared to exsiting state-of-the-art methods. Our code will be made publicly available upon paper acceptance.

Shape of Thought: Progressive Object Assembly via Visual Chain-of-Thought

Multimodal models for text-to-image generation have achieved strong visual fidelity, yet they remain brittle under compositional structural constraints-notably generative numeracy, attribute binding, and part-level relations. To address these challenges, we propose Shape-of-Thought (SoT), a visual CoT framework that enables progressive shape assembly via coherent 2D projections without external engines at inference time. SoT trains a unified multimodal autoregressive model to generate interleaved textual plans and rendered intermediate states, helping the model capture shape-assembly logic without producing explicit geometric representations. To support this paradigm, we introduce SoT-26K, a large-scale dataset of grounded assembly traces derived from part-based CAD hierarchies, and T2S-CompBench, a benchmark for evaluating structural integrity and trace faithfulness. Fine-tuning on SoT-26K achieves 88.4% on component numeracy and 84.8% on structural topology, outperforming text-only baselines by around 20%. SoT establishes a new paradigm for transparent, process-supervised compositional generation. The code is available at https://anonymous.4open.science/r/16FE/. The SoT-26K dataset will be released upon acceptance.