TVGL-CFM:Generating and Forecasting Time-Varying Trajectories of Dynamic Networks with Conditional Flow Matching

Many complex systems such as brain networks, financial markets, and gene-regulatory circuits are described not by a fixed graph but by one that changes over time. A standard way to summarise such structure at each instant is the sparse precision (inverse-covariance) matrix, and the time-varying graphical lasso (TVGL) turns a multivariate signal into a smooth chain of these matrices. We introduce TVGL-CFM, a single model that learns the distribution of such chains and can both generate new, realistic time-varying network trajectories for a given class and forecast how an observed trajectory will continue. Each precision matrix lives on a curved space of positive-definite matrices, but a log-Euclidean chart flattens an entire trajectory into an ordinary vector space, so a simple conditional flow-matching model can be trained and sampled there while every decoded matrix is guaranteed to be a valid precision matrix. For forecasting we start the flow not from noise but from a rough extrapolation of the recent history, so the model only has to learn a small correction. Across EEG motor-imagery, chaotic systems, and gene-expression data, TVGL-CFM generates trajectories that keep the class-discriminative structure of real data, and it forecasts future connectivity more accurately than raw-signal baselines. Generating the structured precision trajectory directly is therefore more faithful than generating raw signals and estimating connectivity afterwards.

Temporal Fact Conflicts in LLMs: Reproducibility Insights from Unifying DYNAMICQA and MULAN

Large Language Models (LLMs) often struggle with temporal fact conflicts due to outdated or evolving information in their training data. Two recent studies with accompanying datasets report opposite conclusions on whether external context can effectively resolve such conflicts. DYNAMICQA evaluates how effective external context is in shifting the model's output distribution, finding that temporal facts are more resistant to change. In contrast, MULAN examines how often external context changes memorised facts, concluding that temporal facts are easier to update. In this reproducibility paper, we first reproduce experiments from both benchmarks. We then reproduce the experiments of each study on the dataset of the other to investigate the source of their disagreement. To enable direct comparison of findings, we standardise both datasets to align with the evaluation settings of each study. Importantly, using an LLM, we synthetically generate realistic natural language contexts to replace MULAN's programmatically constructed statements when reproducing the findings of DYNAMICQA. Our analysis reveals strong dataset dependence: MULAN's findings generalise under both methodological frameworks, whereas applying MULAN's evaluation to DYNAMICQA yields mixed outcomes. Finally, while the original studies only considered 7B LLMs, we reproduce these experiments across LLMs of varying sizes, revealing how model size influences the encoding and updating of temporal facts. Our results highlight how dataset design, evaluation metrics, and model size shape LLM behaviour in the presence of temporal knowledge conflicts.

Auditory Brain Passage Retrieval: Cross-Sensory EEG Training for Neural Information Retrieval

Query formulation from internal information needs remains fundamentally challenging across all Information Retrieval paradigms due to cognitive complexity and physical impairments. Brain Passage Retrieval (BPR) addresses this by directly mapping EEG signals to passage representations without intermediate text translation. However, existing BPR research exclusively uses visual stimuli, leaving critical questions unanswered: Can auditory EEG enable effective retrieval for voice-based interfaces and visually impaired users? Can training on combined EEG datasets from different sensory modalities improve performance despite severe data scarcity? We present the first systematic investigation of auditory EEG for BPR and evaluate cross-sensory training benefits. Using dual encoder architectures with four pooling strategies (CLS, mean, max, multi-vector), we conduct controlled experiments comparing auditory-only, visual-only, and combined training on the Alice (auditory) and Nieuwland (visual) datasets. Results demonstrate that auditory EEG consistently outperforms visual EEG, and cross-sensory training with CLS pooling achieves substantial improvements over individual training: 31% in MRR (0.474), 43% in Hit@1 (0.314), and 28% in Hit@10 (0.858). Critically, combined auditory EEG models surpass BM25 text baselines (MRR: 0.474 vs 0.428), establishing neural queries as competitive with traditional retrieval whilst enabling accessible interfaces. These findings validate auditory neural interfaces for IR tasks and demonstrate that cross-sensory training addresses data scarcity whilst outperforming single-modality approaches Code: https://github.com/NiallMcguire/Audio_BPR

Covariance Density Neural Networks

Graph neural networks have re-defined how we model and predict on network data but there lacks a consensus on choosing the correct underlying graph structure on which to model signals. CoVariance Neural Networks (VNN) address this issue by using the sample covariance matrix as a Graph Shift Operator (GSO). Here, we improve on the performance of VNNs by constructing a Density Matrix where we consider the sample Covariance matrix as a quasi-Hamiltonian of the system in the space of random variables. Crucially, using this density matrix as the GSO allows components of the data to be extracted at different scales, allowing enhanced discriminability and performance. We show that this approach allows explicit control of the stability-discriminability trade-off of the network, provides enhanced robustness to noise compared to VNNs, and outperforms them in useful real-life applications where the underlying covariance matrix is informative. In particular, we show that our model can achieve strong performance in subject-independent Brain Computer Interface EEG motor imagery classification, outperforming EEGnet while being faster. This shows how covariance density neural networks provide a basis for the notoriously difficult task of transferability of BCIs when evaluated on unseen individuals.

Brain-Machine Interfaces & Information Retrieval Challenges and Opportunities

The fundamental goal of Information Retrieval (IR) systems lies in their capacity to effectively satisfy human information needs - a challenge that encompasses not just the technical delivery of information, but the nuanced understanding of human cognition during information seeking. Contemporary IR platforms rely primarily on observable interaction signals, creating a fundamental gap between system capabilities and users' cognitive processes. Brain-Machine Interface (BMI) technologies now offer unprecedented potential to bridge this gap through direct measurement of previously inaccessible aspects of information-seeking behaviour. This perspective paper offers a broad examination of the IR landscape, providing a comprehensive analysis of how BMI technology could transform IR systems, drawing from advances at the intersection of both neuroscience and IR research. We present our analysis through three identified fundamental vertices: (1) understanding the neural correlates of core IR concepts to advance theoretical models of search behaviour, (2) enhancing existing IR systems through contextual integration of neurophysiological signals, and (3) developing proactive IR capabilities through direct neurophysiological measurement. For each vertex, we identify specific research opportunities and propose concrete directions for developing BMI-enhanced IR systems. We conclude by examining critical technical and ethical challenges in implementing these advances, providing a structured roadmap for future research at the intersection of neuroscience and IR.

Aligning Brain Activity with Advanced Transformer Models: Exploring the Role of Punctuation in Semantic Processing

This research examines the congruence between neural activity and advanced transformer models, emphasizing the semantic significance of punctuation in text understanding. Utilizing an innovative approach originally proposed by Toneva and Wehbe, we evaluate four advanced transformer models RoBERTa, DistiliBERT, ALBERT, and ELECTRA against neural activity data. Our findings indicate that RoBERTa exhibits the closest alignment with neural activity, surpassing BERT in accuracy. Furthermore, we investigate the impact of punctuation removal on model performance and neural alignment, revealing that BERT's accuracy enhances in the absence of punctuation. This study contributes to the comprehension of how neural networks represent language and the influence of punctuation on semantic processing within the human brain.

Customizable LLM-Powered Chatbot for Behavioral Science Research

The rapid advancement of Artificial Intelligence has resulted in the advent of Large Language Models (LLMs) with the capacity to produce text that closely resembles human communication. These models have been seamlessly integrated into diverse applications, enabling interactive and responsive communication across multiple platforms. The potential utility of chatbots transcends these traditional applications, particularly in research contexts, wherein they can offer valuable insights and facilitate the design of innovative experiments. In this study, we present a Customizable LLM-Powered Chatbot (CLPC), a web-based chatbot system designed to assist in behavioral science research. The system is meticulously designed to function as an experimental instrument rather than a conventional chatbot, necessitating users to input a username and experiment code upon access. This setup facilitates precise data cross-referencing, thereby augmenting the integrity and applicability of the data collected for research purposes. It can be easily expanded to accommodate new basic events as needed; and it allows researchers to integrate their own logging events without the necessity of implementing a separate logging mechanism. It is worth noting that our system was built to assist primarily behavioral science research but is not limited to it, it can easily be adapted to assist information retrieval research or interacting with chat bot agents in general.

On Creating A Brain-To-Text Decoder

Brain decoding has emerged as a rapidly advancing and extensively utilized technique within neuroscience. This paper centers on the application of raw electroencephalogram (EEG) signals for decoding human brain activity, offering a more expedited and efficient methodology for enhancing our understanding of the human brain. The investigation specifically scrutinizes the efficacy of brain-computer interfaces (BCI) in deciphering neural signals associated with speech production, with particular emphasis on the impact of vocabulary size, electrode density, and training data on the framework's performance. The study reveals the competitive word error rates (WERs) achievable on the Librispeech benchmark through pre-training on unlabelled data for speech processing. Furthermore, the study evaluates the efficacy of voice recognition under configurations with limited labeled data, surpassing previous state-of-the-art techniques while utilizing significantly fewer labels. Additionally, the research provides a comprehensive analysis of error patterns in voice recognition and the influence of model size and unlabelled training data. It underscores the significance of factors such as vocabulary size and electrode density in enhancing BCI performance, advocating for an increase in microelectrodes and refinement of language models.

NSChat: A Chatbot System To Rule Them All

The rapid advancement of artificial intelligence has resulted in the advent of large language models (LLMs) with the capacity to produce text that closely resembles human communication. These models have been seamlessly integrated into diverse applications, enabling interactive and responsive communication across multiple platforms. The potential utility of chatbots transcends these traditional applications, particularly in research contexts, wherein they can offer valuable insights and facilitate the design of innovative experiments. In this study, we present NSChat, a web-based chatbot system designed to assist in neuroscience research. The system is meticulously designed to function as an experimental instrument rather than a conventional chatbot, necessitating users to input a username and experiment code upon access. This setup facilitates precise data cross-referencing, thereby augmenting the integrity and applicability of the data collected for research purposes. It can be easily expanded to accommodate new basic events as needed; and it allows researchers to integrate their own logging events without the necessity of implementing a separate logging mechanism. It is worth noting that our system was built to assist primarily neuroscience research but is not limited to it, it can easily be adapted to assist information retrieval research or interacting with chat bot agents in general.

DEEPER: Dense Electroencephalography Passage Retrieval

Information retrieval systems have historically relied on explicit query formulation, requiring users to translate their information needs into text. This process is particularly disruptive during reading tasks, where users must interrupt their natural flow to formulate queries. We present DEEPER (Dense Electroencephalography Passage Retrieval), a novel framework that enables direct retrieval of relevant passages from users' neural signals during naturalistic reading without intermediate text translation. Building on dense retrieval architectures, DEEPER employs a dual-encoder approach with specialised components for processing neural data, mapping EEG signals and text passages into a shared semantic space. Through careful architecture design and cross-modal negative sampling strategies, our model learns to align neural patterns with their corresponding textual content. Experimental results on the ZuCo dataset demonstrate that direct brain-to-passage retrieval significantly outperforms current EEG-to-text baselines, achieving a 571% improvement in Precision@1. Our ablation studies reveal that the model successfully learns aligned representations between EEG and text modalities (0.29 cosine similarity), while our hard negative sampling strategy contributes to overall performance increases.