Kinematic Analysis and Integration of Vision Algorithms for a Mobile Manipulator Employed Inside a Self-Driving Laboratory

Recent advances in robotics and autonomous systems have broadened the use of robots in laboratory settings, including automated synthesis, scalable reaction workflows, and collaborative tasks in self-driving laboratories (SDLs). This paper presents a comprehensive development of a mobile manipulator designed to assist human operators in such autonomous lab environments. Kinematic modeling of the manipulator is carried out based on the Denavit Hartenberg (DH) convention and inverse kinematics solution is determined to enable precise and adaptive manipulation capabilities. A key focus of this research is enhancing the manipulator ability to reliably grasp textured objects as a critical component of autonomous handling tasks. Advanced vision-based algorithms are implemented to perform real-time object detection and pose estimation, guiding the manipulator in dynamic grasping and following tasks. In this work, we integrate a vision method that combines feature-based detection with homography-driven pose estimation, leveraging depth information to represent an object pose as a $2$D planar projection within $3$D space. This adaptive capability enables the system to accommodate variations in object orientation and supports robust autonomous manipulation across diverse environments. By enabling autonomous experimentation and human-robot collaboration, this work contributes to the scalability and reproducibility of next-generation chemical laboratories

AutoFish: Dataset and Benchmark for Fine-grained Analysis of Fish

Automated fish documentation processes are in the near future expected to play an essential role in sustainable fisheries management and for addressing challenges of overfishing. In this paper, we present a novel and publicly available dataset named AutoFish designed for fine-grained fish analysis. The dataset comprises 1,500 images of 454 specimens of visually similar fish placed in various constellations on a white conveyor belt and annotated with instance segmentation masks, IDs, and length measurements. The data was collected in a controlled environment using an RGB camera. The annotation procedure involved manual point annotations, initial segmentation masks proposed by the Segment Anything Model (SAM), and subsequent manual correction of the masks. We establish baseline instance segmentation results using two variations of the Mask2Former architecture, with the best performing model reaching an mAP of 89.15%. Additionally, we present two baseline length estimation methods, the best performing being a custom MobileNetV2-based regression model reaching an MAE of 0.62cm in images with no occlusion and 1.38cm in images with occlusion. Link to project page: https://vap.aau.dk/autofish/.

3D-ZeF: A 3D Zebrafish Tracking Benchmark Dataset

In this work we present a novel publicly available stereo based 3D RGB dataset for multi-object zebrafish tracking, called 3D-ZeF. Zebrafish is an increasingly popular model organism used for studying neurological disorders, drug addiction, and more. Behavioral analysis is often a critical part of such research. However, visual similarity, occlusion, and erratic movement of the zebrafish makes robust 3D tracking a challenging and unsolved problem. The proposed dataset consists of eight sequences with a duration between 15-120 seconds and 1-10 free moving zebrafish. The videos have been annotated with a total of 86,400 points and bounding boxes. Furthermore, we present a complexity score and a novel open-source modular baseline system for 3D tracking of zebrafish. The performance of the system is measured with respect to two detectors: a naive approach and a Faster R-CNN based fish head detector. The system reaches a MOTA of up to 77.6%. Links to the code and dataset is available at the project page https://vap.aau.dk/3d-zef