Weighted Mean Frequencies: a handcraft Fourier feature for 4D Flow MRI segmentation

In recent decades, the use of 4D Flow MRI images has enabled the quantification of velocity fields within a volume of interest and along the cardiac cycle. However, the lack of resolution and the presence of noise in these biomarkers are significant issues. As indicated by recent studies, it appears that biomarkers such as wall shear stress are particularly impacted by the poor resolution of vessel segmentation. The Phase Contrast Magnetic Resonance Angiography (PC-MRA) is the state-of-the-art method to facilitate segmentation. The objective of this work is to introduce a new handcraft feature that provides a novel visualisation of 4D Flow MRI images, which is useful in the segmentation task. This feature, termed Weighted Mean Frequencies (WMF), is capable of revealing the region in three dimensions where a voxel has been passed by pulsatile flow. Indeed, this feature is representative of the hull of all pulsatile velocity voxels. The value of the feature under discussion is illustrated by two experiments. The experiments involved segmenting 4D Flow MRI images using optimal thresholding and deep learning methods. The results obtained demonstrate a substantial enhancement in terms of IoU and Dice, with a respective increase of 0.12 and 0.13 in comparison with the PC-MRA feature, as evidenced by the deep learning task. This feature has the potential to yield valuable insights that could inform future segmentation processes in other vascular regions, such as the heart or the brain.

NeuroPapyri: A Deep Attention Embedding Network for Handwritten Papyri Retrieval

The intersection of computer vision and machine learning has emerged as a promising avenue for advancing historical research, facilitating a more profound exploration of our past. However, the application of machine learning approaches in historical palaeography is often met with criticism due to their perceived ``black box'' nature. In response to this challenge, we introduce NeuroPapyri, an innovative deep learning-based model specifically designed for the analysis of images containing ancient Greek papyri. To address concerns related to transparency and interpretability, the model incorporates an attention mechanism. This attention mechanism not only enhances the model's performance but also provides a visual representation of the image regions that significantly contribute to the decision-making process. Specifically calibrated for processing images of papyrus documents with lines of handwritten text, the model utilizes individual attention maps to inform the presence or absence of specific characters in the input image. This paper presents the NeuroPapyri model, including its architecture and training methodology. Results from the evaluation demonstrate NeuroPapyri's efficacy in document retrieval, showcasing its potential to advance the analysis of historical manuscripts.