MultiCalib4DEB: A toolbox exploiting multimodal optimisation in Dynamic Energy Budget parameters calibration

Calibration is a crucial step for the validation of computational models and a challenging task to accomplish. Dynamic Energy Budget (DEB) theory has experienced an exponential rise in the number of published papers, which in large part has been made possible by the DEBtool toolbox. Multimodal evolutionary optimisation could provide DEBtool with new capabilities, particularly relevant on the provisioning of equally optimal and diverse solutions. In this paper we present MultiCalib4DEB, a MATLAB toolbox directly integrated into the existing DEBtool toolbox, which uses multimodal evolutionary optimisation algorithms to find multiple global and local optimal and diverse calibration solutions for DEB models. MultiCalib4DEB adds powerful calibration mechanisms, statistical analysis, and visualisation methods to the DEBtool toolbox and provides a wide range of outputs, different calibration alternatives, and specific tools to strengthen the DEBtool calibration module and to aid DEBtool users to evaluate the performance of the calibration results.

TSFEDL: A Python Library for Time Series Spatio-Temporal Feature Extraction and Prediction using Deep Learning (with Appendices on Detailed Network Architectures and Experimental Cases of Study)

The combination of convolutional and recurrent neural networks is a promising framework that allows the extraction of high-quality spatio-temporal features together with its temporal dependencies, which is key for time series prediction problems such as forecasting, classification or anomaly detection, amongst others. In this paper, the TSFEDL library is introduced. It compiles 20 state-of-the-art methods for both time series feature extraction and prediction, employing convolutional and recurrent deep neural networks for its use in several data mining tasks. The library is built upon a set of Tensorflow+Keras and PyTorch modules under the AGPLv3 license. The performance validation of the architectures included in this proposal confirms the usefulness of this Python package.