Minibatch Selection via Partition Matroid Constrained Gradient Matching

Training large language models (LLMs) on heterogeneous data requires selecting minibatches that balance convergence speed with coverage across domains. Existing methods either select samples independently within each domain or rely on computationally expensive proxy models to learn continuous domain weights. We propose PartitionSel, a cross-domain minibatch selection approach that maximizes a validation-guided gradient-matching utility under per-domain budgets encoded as a partition-matroid constraint. By coupling the per-domain budgets through a single utility, PartitionSel is designed to reduce redundancy in selections across domains. The proposed objective is weakly submodular and admits an orthogonal matching pursuit algorithm with provable approximation guarantees. Empirically, we evaluate PartitionSel for minibatch selection during the fine-tuning of Qwen2.5 and Llama-3 on MetaMathQA and Mol-Instructions. PartitionSel achieves robust gains over per-domain and domain-agnostic baselines on both benchmarks. It also reduces the number of conflicting gradient pairs within each batch, indicating that the cross-domain coupling translates into more compatible training updates.

UniPROT: Uniform Prototype Selection via Partial Optimal Transport with Submodular Guarantees

Selecting prototypical examples from a source distribution to represent a target data distribution is a fundamental problem in machine learning. Existing subset selection methods often rely on implicit importance scores, which can be skewed towards majority classes and lead to low-quality prototypes for minority classes. We present $\methodprop$, a novel subset selection framework that minimizes the optimal transport (OT) distance between a uniformly weighted prototypical distribution and the target distribution. While intuitive, this formulation leads to a cardinality-constrained maximization of a \emph{super-additive} objective, which is generally intractable to approximate efficiently. To address this, we propose a principled reformulation of the OT marginal constraints, yielding a partial optimal transport-based submodular objective. We prove that this reformulation enables a greedy algorithm with a $(1-1/e)$ approximation guarantee relative to the original super-additive maximization problem. Empirically, we showcase that enforcing uniform prototype weights in UniPROT consistently improves minority-class representation in imbalanced classification benchmarks without compromising majority-class accuracy. In both finetuning and pretraining regimes for large language models under domain imbalance, UniPROT enforces uniform source contributions, yielding robust performance gains. Our results establish UniPROT as a scalable, theoretically grounded solution for uniform-weighted prototype selection. Our code is publicly available at GitHub\footnote{Code: https://github.com/efficiency-learning/UniPROT}