Reparameterization through Coverings and Topological Weight Priors

We generalise the reparameterization trick applied in variational autoencoders (VAEs) letting these have latent spaces of non-trivial topology - i.e. that of base manifolds covered with other ones, on which some technique for RT is available. That is possible since covering maps are measurable - moreover, in case of particular measure preservation property holding for the covering, one can establish an inequality on KL-divergence between pushforward (PF) densities on the base latent manifold, making the KL-term of VAE's ELBO analytically tractable, despite the topological non-triviality of the supporting latent manifold. Our development follows a route close but somewhat alternative to reparameterization on Lie groups, the latest proposal for which is to reparameterize PFs of normal densities from the Lie algebra - "through" the exponential map, seen by us as sometimes a particular case of what we propose to call reparameterization through a covering. Covering maps need not be global diffeomorphisms (although Lie-exp maps, in general, need not either, but, to date only smooth ones were considered in this context, to the best of our knowledge), which makes many non-trivial topologies tamable to our proposed technique, that we detail on a particular such example. We demonstrate the working of our approach by constructing a VAE with the latent space of Klein bottle (not a Lie group) topology, which we call KleinVAE, successfully learning an appropriate artificial dataset. We discuss potential applicability of such topology-informed generative models as weight priors in Bayesian learning, particularly for convolutional vision models, where said manifold was peculiarly shown to have some relevance.

Vulnerability Detection via Topological Analysis of Attention Maps

Recently, deep learning (DL) approaches to vulnerability detection have gained significant traction. These methods demonstrate promising results, often surpassing traditional static code analysis tools in effectiveness. In this study, we explore a novel approach to vulnerability detection utilizing the tools from topological data analysis (TDA) on the attention matrices of the BERT model. Our findings reveal that traditional machine learning (ML) techniques, when trained on the topological features extracted from these attention matrices, can perform competitively with pre-trained language models (LLMs) such as CodeBERTa. This suggests that TDA tools, including persistent homology, are capable of effectively capturing semantic information critical for identifying vulnerabilities.

ICML Topological Deep Learning Challenge 2024: Beyond the Graph Domain

This paper describes the 2nd edition of the ICML Topological Deep Learning Challenge that was hosted within the ICML 2024 ELLIS Workshop on Geometry-grounded Representation Learning and Generative Modeling (GRaM). The challenge focused on the problem of representing data in different discrete topological domains in order to bridge the gap between Topological Deep Learning (TDL) and other types of structured datasets (e.g. point clouds, graphs). Specifically, participants were asked to design and implement topological liftings, i.e. mappings between different data structures and topological domains --like hypergraphs, or simplicial/cell/combinatorial complexes. The challenge received 52 submissions satisfying all the requirements. This paper introduces the main scope of the challenge, and summarizes the main results and findings.

Porosity and topological properties of triply periodic minimal surfaces

Triple periodic minimal surfaces (TPMS) have garnered significant interest due to their structural efficiency and controllable geometry, making them suitable for a wide range of applications. This paper investigates the relationships between porosity and persistence entropy with the shape factor of TPMS. We propose conjectures suggesting that these relationships are polynomial in nature, derived through the application of machine learning techniques. This study exemplifies the integration of machine learning methodologies in pure mathematical research. Besides the conjectures, we provide the mathematical models that might have the potential implications for the design and modeling of TPMS structures in various practical applications.

Persistent Homology of Triple Periodic Minimal Surfaces

Triple periodic minimal surfaces (TPMS) have garnered significant interest due to their structural efficiency and controllable geometry, making them suitable for a wide range of applications. This paper investigates the relationships between porosity and persistence entropy with the shape factor of TPMS. We propose conjectures suggesting that these relationships are polynomial in nature, derived through the application of machine learning techniques. This study exemplifies the integration of machine learning methodologies in pure mathematical research. Besides the conjectures, we provide the mathematical models that might have the potential implications for the design and modeling of TPMS structures in various practical applications.

ICML 2023 Topological Deep Learning Challenge : Design and Results

This paper presents the computational challenge on topological deep learning that was hosted within the ICML 2023 Workshop on Topology and Geometry in Machine Learning. The competition asked participants to provide open-source implementations of topological neural networks from the literature by contributing to the python packages TopoNetX (data processing) and TopoModelX (deep learning). The challenge attracted twenty-eight qualifying submissions in its two-month duration. This paper describes the design of the challenge and summarizes its main findings.