Abstract:Synthesizing time series from natural language is emerging as the most expressive form of controllable time series generation. However, existing text-conditioned generators either take caption embeddings frozen from off-the-shelf text encoders, or adapt the encoder end-to-end, letting the denoising loss shape the embeddings only as a by-product. In either case, the conditioning representation is never deliberately matched to the signal modality, leaving it ill-suited to guide generation. We address this by introducing GALA: Generation-Aware cross-modaL Alignment for text conditional time series generation. GALA is a two-stage approach that first contrastively couples a pretrained text encoder with a time-series foundation model into a shared embedding space with both encoders adapted to generation by an auxiliary generative loss, and then freezes the resulting caption embedding to drive a flow-matching generator. On TSFragment-600K, spanning four domains and three fragment lengths, GALA sets a new state of the art, ranking first in 30 of 36 metric columns and reaching an average rank of 1.08/1.08/1.42 at lengths 24/48/96 against 1.92/2.00/1.75 for the strongest baseline. We further find that generator-internal text encoders force a trade-off between fidelity and caption adherence, whereas conditioning on the aligned embedding breaks it: FID, CTTP, and JFTSD all improve at once. Ablating the auxiliary loss degrades FID, CTTP and JFTSD together, it indicates the generative term is a necessary component of the alignment rather than an add-on.
Abstract:Continuous physiological time series underpin modern clinical monitoring, yet many of the most informative signals are invasive, expensive, or simply unavailable for a given patient. Conditional generation offers a remedy: an absent signal can be synthesized from co-recorded signals and routine clinical variables. Existing generators, however, are built around a single conditioning modality and degrade when forced to handle the heterogeneous, irregularly missing mix of time-variant signals and static covariates seen in practice. We propose ReCoGen (Represent Conditions, then Generate), a two-stage framework that decouples multimodal condition representation from target generation. Stage I trains one masked autoencoder per modality, distilling each time-variant condition into a compact and missingness-tolerant token sequence. Stage II trains a flow-matching generator that fuses these tokens with static conditions to synthesize the target signal. Across three physiological benchmarks, including continuous glucose monitoring on AI-READI and arterial blood pressure generation on MIMIC-III and MIMIC-IV, ReCoGen attains the best downstream utility on all sixteen (dataset, task, metric) settings, surpassing six representative conditional generators; on thirteen of them its utility also reaches or exceeds the utility measured on the real signal, a reference we read as an approximate anchor rather than a ceiling. Ablations trace the gains to the conditioning path: learnable cross-attention over the frozen per-modality encoders, and a dual token-plus-AdaLN route for the static conditions. ReCoGen thus turns routinely collected signals into informative surrogates for invasive or unavailable ones, a step toward less invasive, lower-cost continuous clinical monitoring.