Robustness and Reasoning Fidelity of Large Language Models in Long-Context Code Question Answering

Large language models (LLMs) increasingly assist software engineering tasks that require reasoning over long code contexts, yet their robustness under varying input conditions remains unclear. We conduct a systematic study of long-context code question answering using controlled ablations that test sensitivity to answer format, distractors, and context scale. Extending LongCodeBench Python dataset with new COBOL and Java question-answer sets, we evaluate state-of-the-art models under three settings: (i) shuffled multiple-choice options, (ii) open-ended questions and (iii) needle-in-a-haystack contexts containing relevant and adversarially irrelevant information. Results show substantial performance drops in both shuffled multiple-choice options and open-ended questions, and brittle behavior in the presence of irrelevant cues. Our findings highlight limitations of current long-context evaluations and provide a broader benchmark for assessing code reasoning in both legacy and modern systems.