CIMON: Towards High-quality Hash Codes

Recently, hashing is widely-used in approximate nearest neighbor search for its storage and computational efficiency. Due to the lack of labeled data in practice, many studies focus on unsupervised hashing. Most of the unsupervised hashing methods learn to map images into semantic similarity-preserving hash codes by constructing local semantic similarity structure from the pre-trained model as guiding information, i.e., treating each point pair similar if their distance is small in feature space. However, due to the inefficient representation ability of the pre-trained model, many false positives and negatives in local semantic similarity will be introduced and lead to error propagation during hash code learning. Moreover, most of hashing methods ignore the basic characteristics of hash codes such as collisions, which will cause instability of hash codes to disturbance. In this paper, we propose a new method named Comprehensive sImilarity Mining and cOnsistency learNing (CIMON). First, we use global constraint learning and similarity statistical distribution to obtain reliable and smooth guidance. Second, image augmentation and consistency learning will be introduced to explore both semantic and contrastive consistency to derive robust hash codes with fewer collisions. Extensive experiments on several benchmark datasets show that the proposed method consistently outperforms a wide range of state-of-the-art methods in both retrieval performance and robustness.

A Survey on Deep Hashing Methods

Nearest neighbor search is to find the data points in the database such that the distances from them to the query are the smallest, which is a fundamental problem in various domains, such as computer vision, recommendation systems and machine learning. Hashing is one of the most widely used method for its computational and storage efficiency. With the development of deep learning, deep hashing methods show more advantages than traditional methods. In this paper, we present a comprehensive survey of the deep hashing algorithms. Based on the loss function, we categorize deep supervised hashing methods according to the manners of preserving the similarities into: pairwise similarity preserving, multiwise similarity preserving, implicit similarity preserving, as well as quantization. In addition, we also introduce some other topics such as deep unsupervised hashing and multi-modal deep hashing methods. Meanwhile, we also present some commonly used public datasets and the scheme to measure the performance of deep hashing algorithms. Finally, we discussed some potential research directions in the conclusion.

Predicting protein inter-residue contacts using composite likelihood maximization and deep learning

Accurate prediction of inter-residue contacts of a protein is important to calcu- lating its tertiary structure. Analysis of co-evolutionary events among residues has been proved effective to inferring inter-residue contacts. The Markov ran- dom field (MRF) technique, although being widely used for contact prediction, suffers from the following dilemma: the actual likelihood function of MRF is accurate but time-consuming to calculate, in contrast, approximations to the actual likelihood, say pseudo-likelihood, are efficient to calculate but inaccu- rate. Thus, how to achieve both accuracy and efficiency simultaneously remains a challenge. In this study, we present such an approach (called clmDCA) for contact prediction. Unlike plmDCA using pseudo-likelihood, i.e., the product of conditional probability of individual residues, our approach uses composite- likelihood, i.e., the product of conditional probability of all residue pairs. Com- posite likelihood has been theoretically proved as a better approximation to the actual likelihood function than pseudo-likelihood. Meanwhile, composite likelihood is still efficient to maximize, thus ensuring the efficiency of clmDCA. We present comprehensive experiments on popular benchmark datasets, includ- ing PSICOV dataset and CASP-11 dataset, to show that: i) clmDCA alone outperforms the existing MRF-based approaches in prediction accuracy. ii) When equipped with deep learning technique for refinement, the prediction ac- curacy of clmDCA was further significantly improved, suggesting the suitability of clmDCA for subsequent refinement procedure. We further present successful application of the predicted contacts to accurately build tertiary structures for proteins in the PSICOV dataset. Accessibility: The software clmDCA and a server are publicly accessible through http://protein.ict.ac.cn/clmDCA/.