Non-negative Matrix Factorisation with Topological Regularisation

We investigate the learning of interpretable bases in non-negative matrix factorisation (NMF) by regularising the topology of the learned basis functions. Our approach is motivated by the observation that many data modalities can be viewed as non-negative functions on a structured domain, where the quality of a basis is intrinsically linked to its topology. However, naive methods for incorporating the topology of the support are often hindered by discreteness and threshold dependence, rendering them unsuitable for continuous optimisation. We address these challenges by employing persistent homology as a stable, threshold-free topological quantifier and by designing topological scores that integrate into the NMF objective as regularisers. The resulting framework encompasses spatially coherent image components, periodic time-series structures, and clique-like graph signals within a unified modelling language.

Topological filtering of a signal over a network

Graph Signal Processing deals with the problem of analyzing and processing signals defined on graphs. In this paper, we introduce a novel filtering method for graph-based signals by employing ideas from topological data analysis. We begin by working with signals over general graphs and then extend our approach to what we term signals over graphs with faces. To construct the filter, we introduce a new structure called the Basin Hierarchy Tree, which encodes the persistent homology. We provide an efficient algorithm and demonstrate the effectiveness of our approach through examples with synthetic and real datasets. This work bridges topological data analysis and signal processing, presenting a new application of persistent homology as a topological data processing tool.