Improved cystic hygroma detection from prenatal imaging using ultrasound-specific self-supervised representation learning

Cystic hygroma is a high-risk prenatal ultrasound finding that portends high rates of chromosomal abnormalities, structural malformations, and adverse pregnancy outcomes. Automated detection can increase reproducibility and support scalable early screening programs, but supervised deep learning methods are limited by small labelled datasets. This study assesses whether ultrasound-specific self-supervised pretraining can facilitate accurate, robust deep learning detection of cystic hygroma in first-trimester ultrasound images. We fine-tuned the Ultrasound Self-Supervised Foundation Model with Masked Autoencoding (USF-MAE), pretrained on over 370,000 unlabelled ultrasound images, for binary classification of normal controls and cystic hygroma cases used in this study. Performance was evaluated on the same curated ultrasound dataset, preprocessing pipeline, and 4-fold cross-validation protocol as for the DenseNet-169 baseline, using accuracy, sensitivity, specificity, and the area under the receiver operating characteristic curve (ROC-AUC). Model interpretability was analyzed qualitatively using Score-CAM visualizations. USF-MAE outperformed the DenseNet-169 baseline on all evaluation metrics. The proposed model yielded a mean accuracy of 0.96, sensitivity of 0.94, specificity of 0.98, and ROC-AUC of 0.98 compared to 0.93, 0.92, 0.94, and 0.94 for the DenseNet-169 baseline, respectively. Qualitative Score-CAM visualizations of model predictions demonstrated clinical relevance by highlighting expected regions in the fetal neck for both positive and negative cases. Paired statistical analysis using a Wilcoxon signed-rank test confirmed that performance improvements achieved by USF-MAE were statistically significant (p = 0.0057).

Deep Learning Analysis of Prenatal Ultrasound for Identification of Ventriculomegaly

The proposed study aimed to develop a deep learning model capable of detecting ventriculomegaly on prenatal ultrasound images. Ventriculomegaly is a prenatal condition characterized by dilated cerebral ventricles of the fetal brain and is important to diagnose early, as it can be associated with an increased risk for fetal aneuploidies and/or underlying genetic syndromes. An Ultrasound Self-Supervised Foundation Model with Masked Autoencoding (USF-MAE), recently developed by our group, was fine-tuned for a binary classification task to distinguish fetal brain ultrasound images as either normal or showing ventriculomegaly. The USF-MAE incorporates a Vision Transformer encoder pretrained on more than 370,000 ultrasound images from the OpenUS-46 corpus. For this study, the pretrained encoder was adapted and fine-tuned on a curated dataset of fetal brain ultrasound images to optimize its performance for ventriculomegaly detection. Model evaluation was conducted using 5-fold cross-validation and an independent test cohort, and performance was quantified using accuracy, precision, recall, specificity, F1-score, and area under the receiver operating characteristic curve (AUC). The proposed USF-MAE model reached an F1-score of 91.76% on the 5-fold cross-validation and 91.78% on the independent test set, with much higher scores than those obtained by the baseline models by 19.37% and 16.15% compared to VGG-19, 2.31% and 2.56% compared to ResNet-50, and 5.03% and 11.93% compared to ViT-B/16, respectively. The model also showed a high mean test precision of 94.47% and an accuracy of 97.24%. The Eigen-CAM (Eigen Class Activation Map) heatmaps showed that the model was focusing on the ventricle area for the diagnosis of ventriculomegaly, which has explainability and clinical plausibility.

USF-MAE: Ultrasound Self-Supervised Foundation Model with Masked Autoencoding

Ultrasound imaging is one of the most widely used diagnostic modalities, offering real-time, radiation-free assessment across diverse clinical domains. However, interpretation of ultrasound images remains challenging due to high noise levels, operator dependence, and limited field of view, resulting in substantial inter-observer variability. Current Deep Learning approaches are hindered by the scarcity of large labeled datasets and the domain gap between general and sonographic images, which limits the transferability of models pretrained on non-medical data. To address these challenges, we introduce the Ultrasound Self-Supervised Foundation Model with Masked Autoencoding (USF-MAE), the first large-scale self-supervised MAE framework pretrained exclusively on ultrasound data. The model was pre-trained on 370,000 2D and 3D ultrasound images curated from 46 open-source datasets, collectively termed OpenUS-46, spanning over twenty anatomical regions. This curated dataset has been made publicly available to facilitate further research and reproducibility. Using a Vision Transformer encoder-decoder architecture, USF-MAE reconstructs masked image patches, enabling it to learn rich, modality-specific representations directly from unlabeled data. The pretrained encoder was fine-tuned on three public downstream classification benchmarks: BUS-BRA (breast cancer), MMOTU-2D (ovarian tumors), and GIST514-DB (gastrointestinal stromal tumors). Across all tasks, USF-MAE consistently outperformed conventional CNN and ViT baselines, achieving F1-scores of 81.6%, 79.6%, and 82.4%, respectively. Despite not using labels during pretraining, USF-MAE approached the performance of the supervised foundation model UltraSam on breast cancer classification and surpassed it on the other tasks, demonstrating strong cross-anatomical generalization.