Facilitating deep acoustic phenotyping: A basic coding scheme of infant vocalisations preluding computational analysis, machine learning and clinical reasoning

Theoretical background: early verbal development is not yet fully understood, especially in its formative phase. Research question: can a reliable, easy-to-use coding scheme for the classification of early infant vocalizations be defined that is applicable as a basis for further analysis of language development? Methods: in a longitudinal study of 45 neurotypical infants, we analyzed vocalizations of the first 4 months of life. Audio segments were assigned to 5 classes: (1) Voiced and (2) Voiceless vocalizations; (3) Defined signal; (4) Non-target; (5) Nonassignable. Results: Two female coders with different experience achieved high agreement without intensive training. Discussion and Conclusion: The reliable scheme can be used in research and clinical settings for efficient coding of infant vocalizations, as a basis for detailed manual and machine analyses.

Infant movement classification through pressure distribution analysis -- added value for research and clinical implementation

In recent years, numerous automated approaches complementing the human Prechtl's general movements assessment (GMA) were developed. Most approaches utilised RGB or RGB-D cameras to obtain motion data, while a few employed accelerometers or inertial measurement units. In this paper, within a prospective longitudinal infant cohort study applying a multimodal approach for movement tracking and analyses, we examined for the first time the performance of pressure sensors for classifying an infant general movements pattern, the fidgety movements. We developed an algorithm to encode movements with pressure data from a 32x32 grid mat with 1024 sensors. Multiple neural network architectures were investigated to distinguish presence vs. absence of the fidgety movements, including the feed-forward networks (FFNs) with manually defined statistical features and the convolutional neural networks (CNNs) with learned features. The CNN with multiple convolutional layers and learned features outperformed the FFN with manually defined statistical features, with classification accuracy of $81.4\%$ and $75.6\%$, respectively. We compared the pros and cons of the pressure sensing approach to the video-based and inertial motion senor-based approaches for analysing infant movements. The non-intrusive, extremely easy-to-use pressure sensing approach has great potential for efficient large-scaled movement data acquisition across cites and for application in busy daily clinical routines for evaluating infant neuromotor functions. The pressure sensors can be combined with other sensor modalities to enhance infant movement analyses in research and practice, as proposed in our multimodal sensor fusion model.

Open video data sharing in developmental and behavioural science

Video recording is a widely used method for documenting infant and child behaviours in research and clinical practice. Video data has rarely been shared due to ethical concerns of confidentiality, although the need of shared large-scaled datasets remains increasing. This demand is even more imperative when data-driven computer-based approaches are involved, such as screening tools to complement clinical assessments. To share data while abiding by privacy protection rules, a critical question arises whether efforts at data de-identification reduce data utility? We addressed this question by showcasing the Prechtl's general movements assessment (GMA), an established and globally practised video-based diagnostic tool in early infancy for detecting neurological deficits, such as cerebral palsy. To date, no shared expert-annotated large data repositories for infant movement analyses exist. Such datasets would massively benefit training and recalibration of human assessors and the development of computer-based approaches. In the current study, sequences from a prospective longitudinal infant cohort with a total of 19451 available general movements video snippets were randomly selected for human clinical reasoning and computer-based analysis. We demonstrated for the first time that pseudonymisation by face-blurring video recordings is a viable approach. The video redaction did not affect classification accuracy for either human assessors or computer vision methods, suggesting an adequate and easy-to-apply solution for sharing movement video data. We call for further explorations into efficient and privacy rule-conforming approaches for deidentifying video data in scientific and clinical fields beyond movement assessments. These approaches shall enable sharing and merging stand-alone video datasets into large data pools to advance science and public health.

Nonlinear functional mapping of the human brain

The field of neuroimaging has truly become data rich, and novel analytical methods capable of gleaning meaningful information from large stores of imaging data are in high demand. Those methods that might also be applicable on the level of individual subjects, and thus potentially useful clinically, are of special interest. In the present study, we introduce just such a method, called nonlinear functional mapping (NFM), and demonstrate its application in the analysis of resting state fMRI from a 242-subject subset of the IMAGEN project, a European study of adolescents that includes longitudinal phenotypic, behavioral, genetic, and neuroimaging data. NFM employs a computational technique inspired by biological evolution to discover and mathematically characterize interactions among ROI (regions of interest), without making linear or univariate assumptions. We show that statistics of the resulting interaction relationships comport with recent independent work, constituting a preliminary cross-validation. Furthermore, nonlinear terms are ubiquitous in the models generated by NFM, suggesting that some of the interactions characterized here are not discoverable by standard linear methods of analysis. We discuss one such nonlinear interaction in the context of a direct comparison with a procedure involving pairwise correlation, designed to be an analogous linear version of functional mapping. We find another such interaction that suggests a novel distinction in brain function between drinking and non-drinking adolescents: a tighter coupling of ROI associated with emotion, reward, and interoceptive processes such as thirst, among drinkers. Finally, we outline many improvements and extensions of the methodology to reduce computational expense, complement other analytical tools like graph-theoretic analysis, and allow for voxel level NFM to eliminate the necessity of ROI selection.