Cancer Subtype Identification through Integrating Inter and Intra Dataset Relationships in Multi-Omics Data

The integration of multi-omics data has emerged as a promising approach for gaining comprehensive insights into complex diseases such as cancer. This paper proposes a novel approach to identify cancer subtypes through the integration of multi-omics data for clustering. The proposed method, named LIDAF utilises affinity matrices based on linear relationships between and within different omics datasets (Linear Inter and Intra Dataset Affinity Fusion (LIDAF)). Canonical Correlation Analysis is in this paper employed to create distance matrices based on Euclidean distances between canonical variates. The distance matrices are converted to affinity matrices and those are fused in a three-step process. The proposed LIDAF addresses the limitations of the existing method resulting in improvement of clustering performance as measured by the Adjusted Rand Index and the Normalized Mutual Information score. Moreover, our proposed LIDAF approach demonstrates a notable enhancement in 50% of the log10 rank p-values obtained from Cox survival analysis, surpassing the performance of the best reported method, highlighting its potential of identifying distinct cancer subtypes.

Bayesian Integration of Information Using Top-Down Modulated WTA Networks

Winner Take All (WTA) circuits a type of Spiking Neural Networks (SNN) have been suggested as facilitating the brain's ability to process information in a Bayesian manner. Research has shown that WTA circuits are capable of approximating hierarchical Bayesian models via Expectation Maximization (EM). So far, research in this direction has focused on bottom up processes. This is contrary to neuroscientific evidence that shows that, besides bottom up processes, top down processes too play a key role in information processing by the human brain. Several functions ascribed to top down processes include direction of attention, adjusting for expectations, facilitation of encoding and recall of learned information, and imagery. This paper explores whether WTA circuits are suitable for further integrating information represented in separate WTA networks. Furthermore, it explores whether, and under what circumstances, top down processes can improve WTA network performance with respect to inference and learning. The results show that WTA circuits are capable of integrating the probabilistic information represented by other WTA networks, and that top down processes can improve a WTA network's inference and learning performance. Notably, it is able to do this according to key neuromorphic principles, making it ideal for low-latency and energy efficient implementation on neuromorphic hardware.