MedShapeNet -- A Large-Scale Dataset of 3D Medical Shapes for Computer Vision

We present MedShapeNet, a large collection of anatomical shapes (e.g., bones, organs, vessels) and 3D surgical instrument models. Prior to the deep learning era, the broad application of statistical shape models (SSMs) in medical image analysis is evidence that shapes have been commonly used to describe medical data. Nowadays, however, state-of-the-art (SOTA) deep learning algorithms in medical imaging are predominantly voxel-based. In computer vision, on the contrary, shapes (including, voxel occupancy grids, meshes, point clouds and implicit surface models) are preferred data representations in 3D, as seen from the numerous shape-related publications in premier vision conferences, such as the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), as well as the increasing popularity of ShapeNet (about 51,300 models) and Princeton ModelNet (127,915 models) in computer vision research. MedShapeNet is created as an alternative to these commonly used shape benchmarks to facilitate the translation of data-driven vision algorithms to medical applications, and it extends the opportunities to adapt SOTA vision algorithms to solve critical medical problems. Besides, the majority of the medical shapes in MedShapeNet are modeled directly on the imaging data of real patients, and therefore it complements well existing shape benchmarks comprising of computer-aided design (CAD) models. MedShapeNet currently includes more than 100,000 medical shapes, and provides annotations in the form of paired data. It is therefore also a freely available repository of 3D models for extended reality (virtual reality - VR, augmented reality - AR, mixed reality - MR) and medical 3D printing. This white paper describes in detail the motivations behind MedShapeNet, the shape acquisition procedures, the use cases, as well as the usage of the online shape search portal: https://medshapenet.ikim.nrw/

Online classifier adaptation for cost-sensitive learning

In this paper, we propose the problem of online cost-sensitive clas- sifier adaptation and the first algorithm to solve it. We assume we have a base classifier for a cost-sensitive classification problem, but it is trained with respect to a cost setting different to the desired one. Moreover, we also have some training data samples streaming to the algorithm one by one. The prob- lem is to adapt the given base classifier to the desired cost setting using the steaming training samples online. To solve this problem, we propose to learn a new classifier by adding an adaptation function to the base classifier, and update the adaptation function parameter according to the streaming data samples. Given a input data sample and the cost of misclassifying it, we up- date the adaptation function parameter by minimizing cost weighted hinge loss and respecting previous learned parameter simultaneously. The proposed algorithm is compared to both online and off-line cost-sensitive algorithms on two cost-sensitive classification problems, and the experiments show that it not only outperforms them one classification performances, but also requires significantly less running time.