Model-Agnostic FDR Control via Group Gaussian Mirror and Permutation SHAP

Most FDR-controlled feature selection methods are designed for coordinate-wise hypotheses, where each feature has a single weight or importance score. This abstraction fails in sequential and grouped models, where one original feature is represented by a block of sub-features, such as lags, recurrent states, or attention-based interactions. We propose a grouped-feature FDR control framework for such settings. For grouped linear models, we construct null-symmetric block-level mirror statistics with matrix-valued perturbations. For neural sequential models, we combine Permutation SHAP derivatives as model-agnostic block-level importance scores with kernel-based dependence measure. The framework is model-agnostic across network architectures, does not require specifying the covariate distribution, and reduces to Gaussian Mirror or Neural Gaussian Mirror when the block size is one. We prove FDR control for low- and high-dimensional grouped linear models and asymptotic symmetry of smoothed Permutation SHAP derivatives under fixed fitted nonlinear models. Experiments on simulated and real-world datasets show reliable FDR control and improved power under correlated grouped-feature signals.

CatNet: Effective FDR Control in LSTM with Gaussian Mirrors and SHAP Feature Importance

We introduce CatNet, an algorithm that effectively controls False Discovery Rate (FDR) and selects significant features in LSTM with the Gaussian Mirror (GM) method. To evaluate the feature importance of LSTM in time series, we introduce a vector of the derivative of the SHapley Additive exPlanations (SHAP) to measure feature importance. We also propose a new kernel-based dependence measure to avoid multicollinearity in the GM algorithm, to make a robust feature selection with controlled FDR. We use simulated data to evaluate CatNet's performance in both linear models and LSTM models with different link functions. The algorithm effectively controls the FDR while maintaining a high statistical power in all cases. We also evaluate the algorithm's performance in different low-dimensional and high-dimensional cases, demonstrating its robustness in various input dimensions. To evaluate CatNet's performance in real world applications, we construct a multi-factor investment portfolio to forecast the prices of S\&P 500 index components. The results demonstrate that our model achieves superior predictive accuracy compared to traditional LSTM models without feature selection and FDR control. Additionally, CatNet effectively captures common market-driving features, which helps informed decision-making in financial markets by enhancing the interpretability of predictions. Our study integrates of the Gaussian Mirror algorithm with LSTM models for the first time, and introduces SHAP values as a new feature importance metric for FDR control methods, marking a significant advancement in feature selection and error control for neural networks.