Vector Summaries of Persistence Diagrams for Permutation-based Hypothesis Testing

Over the past decade, the techniques of topological data analysis (TDA) have grown into prominence to describe the shape of data. In recent years, there has been increasing interest in developing statistical methods and in particular hypothesis testing procedures for TDA. Under the statistical perspective, persistence diagrams -- the central multi-scale topological descriptors of data provided by TDA -- are viewed as random observations sampled from some population or process. In this context, one of the earliest works on hypothesis testing focuses on the two-group permutation-based approach where the associated loss function is defined in terms of within-group pairwise bottleneck or Wasserstein distances between persistence diagrams (Robinson and Turner, 2017). However, in situations where persistence diagrams are large in size and number, the permutation test in question gets computationally more costly to apply. To address this limitation, we instead consider pairwise distances between vectorized functional summaries of persistence diagrams for the loss function. In the present work, we explore the utility of the Betti function in this regard, which is one of the simplest function summaries of persistence diagrams. We introduce an alternative vectorization method for the Betti function based on integration and prove stability results with respect to the Wasserstein distance. Moreover, we propose a new shuffling technique of group labels to increase the power of the test. Through several experimental studies, on both synthetic and real data, we show that the vectorized Betti function leads to competitive results compared to the baseline method involving the Wasserstein distances for the permutation test.

A fast topological approach for predicting anomalies in time-varying graphs

Large time-varying graphs are increasingly common in financial, social and biological settings. Feature extraction that efficiently encodes the complex structure of sparse, multi-layered, dynamic graphs presents computational and methodological challenges. In the past decade, a persistence diagram (PD) from topological data analysis (TDA) has become a popular descriptor of shape of data with a well-defined distance between points. However, applications of TDA to graphs, where there is no intrinsic concept of distance between the nodes, remain largely unexplored. This paper addresses this gap in the literature by introducing a computationally efficient framework to extract shape information from graph data. Our framework has two main steps: first, we compute a PD using the so-called lower-star filtration which utilizes quantitative node attributes, and then vectorize it by averaging the associated Betti function over successive scale values on a one-dimensional grid. Our approach avoids embedding a graph into a metric space and has stability properties against input noise. In simulation studies, we show that the proposed vector summary leads to improved change point detection rate in time-varying graphs. In a real data application, our approach provides up to 22% gain in anomalous price prediction for the Ethereum cryptocurrency transaction networks.