Abstract:Brain tumor MRI segmentation is essential for clinical diagnosis and treatment planning, enabling accurate lesion detection and radiotherapy target delineation. However, tumor lesions occupy only a small fraction of the volumetric space, resulting in severe spatial sparsity, while existing segmentation networks often overlook clinically observed spatial priors of tumor occurrence, leading to redundant feature computation over extensive background regions. To address this issue, we propose PGR-Net (Prior-Guided ROI Reasoning Network) - an explicit ROI-aware framework that incorporates a data-driven spatial prior set to capture the distribution and scale characteristics of tumor lesions, providing global guidance for more stable segmentation. Leveraging these priors, PGR-Net introduces a hierarchical Top-K ROI decision mechanism that progressively selects the most confident lesion candidate regions across encoder layers to improve localization precision. We further develop the WinGS-ROI (Windowed Gaussian-Spatial Decay ROI) module, which uses multi-window Gaussian templates with a spatial decay function to produce center-enhanced guidance maps, thus directing feature learning throughout the network. With these ROI features, a windowed RetNet backbone is adopted to enhance localization reliability. Experiments on BraTS-2019/2023 and MSD Task01 show that PGR-Net consistently outperforms existing approaches while using only 8.64M Params, achieving Dice scores of 89.02%, 91.82%, and 89.67% on the Whole Tumor region. Code is available at https://github.com/CNU-MedAI-Lab/PGR-Net.
Abstract:MRI tumor segmentation remains a critical challenge in medical imaging, where volumetric analysis faces unique computational demands due to the complexity of 3D data. The spatially sequential arrangement of adjacent MRI slices provides valuable information that enhances segmentation continuity and accuracy, yet this characteristic remains underutilized in many existing models. The spatial correlations between adjacent MRI slices can be regarded as "temporal-like" data, similar to frame sequences in video segmentation tasks. To bridge this gap, we propose M-Net, a flexible framework specifically designed for sequential image segmentation. M-Net introduces the novel Mesh-Cast mechanism, which seamlessly integrates arbitrary sequential models into the processing of both channel and temporal information, thereby systematically capturing the inherent "temporal-like" spatial correlations between MRI slices. Additionally, we define an MRI sequential input pattern and design a Two-Phase Sequential (TPS) training strategy, which first focuses on learning common patterns across sequences before refining slice-specific feature extraction. This approach leverages temporal modeling techniques to preserve volumetric contextual information while avoiding the high computational cost of full 3D convolutions, thereby enhancing the generalizability and robustness of M-Net in sequential segmentation tasks. Experiments on the BraTS2019 and BraTS2023 datasets demonstrate that M-Net outperforms existing methods across all key metrics, establishing itself as a robust solution for temporally-aware MRI tumor segmentation.