Scientific Knowledge Discovery in the Age of Large Language Models

The rapid growth of scholarly literature has made identifying relevant publications increasingly difficult, and conventional search systems still depend heavily on manually formulated queries and effortful manual inspection. Generative large language models (LLMs) offer a more flexible alternative, supporting literature retrieval and the screening of candidate studies against eligibility criteria. This chapter surveys 34 peer-reviewed papers applying generative LLMs to these two tasks, identified via a Boolean search over the OpenAIRE Graph (1,589 records screened to 34 inclusions). Reviewed studies are characterised by LLMs employed, model access and adaptation, prompting and architectural techniques, ground-truth sources, and evaluation metrics.

Exploration of Perceptual Speech Features for Clinical Decision-Support in Mental Health Care

Speech and language technologies offer valuable opportunities for supporting mental health assessment through objective and interpretable cues. We present a systematic feature-based analysis framework leveraging perceptually grounded acoustic and linguistic characteristics, including prosody, vocal quality, semantic coherence, syntactic structure, and sarcasm. Using statistical analysis and interpretable machine learning (XGBoost with SHAP and LIME), we examine associations between speech features and validated symptom measures of depression, anxiety, and ADHD. Evaluated on both controlled benchmark datasets (StressID, DAIC-WOZ, Androids, EATD) and a real-world clinical dataset, the framework reveals stable and consistent relationships between symptom severity and vocal irregularities (e.g., shimmer, jitter), lexical-syntactic patterns, and affective tone. An ablation study conducted across all datasets further identifies the most informative feature groups. This work explores a transparent and clinically interpretable approach to speech-based mental health analysis.

Open and Sustainable AI: challenges, opportunities and the road ahead in the life sciences

Artificial intelligence (AI) has recently seen transformative breakthroughs in the life sciences, expanding possibilities for researchers to interpret biological information at an unprecedented capacity, with novel applications and advances being made almost daily. In order to maximise return on the growing investments in AI-based life science research and accelerate this progress, it has become urgent to address the exacerbation of long-standing research challenges arising from the rapid adoption of AI methods. We review the increased erosion of trust in AI research outputs, driven by the issues of poor reusability and reproducibility, and highlight their consequent impact on environmental sustainability. Furthermore, we discuss the fragmented components of the AI ecosystem and lack of guiding pathways to best support Open and Sustainable AI (OSAI) model development. In response, this perspective introduces a practical set of OSAI recommendations directly mapped to over 300 components of the AI ecosystem. Our work connects researchers with relevant AI resources, facilitating the implementation of sustainable, reusable and transparent AI. Built upon life science community consensus and aligned to existing efforts, the outputs of this perspective are designed to aid the future development of policy and structured pathways for guiding AI implementation.

From raw affiliations to organization identifiers

Accurate affiliation matching, which links affiliation strings to standardized organization identifiers, is critical for improving research metadata quality, facilitating comprehensive bibliometric analyses, and supporting data interoperability across scholarly knowledge bases. Existing approaches fail to handle the complexity of affiliation strings that often include mentions of multiple organizations or extraneous information. In this paper, we present AffRo, a novel approach designed to address these challenges, leveraging advanced parsing and disambiguation techniques. We also introduce AffRoDB, an expert-curated dataset to systematically evaluate affiliation matching algorithms, ensuring robust benchmarking. Results demonstrate the effectiveness of AffRp in accurately identifying organizations from complex affiliation strings.