Spatial Context Improves the Integration of Text with Remote Sensing for Mapping Environmental Variables

Recent developments in natural language processing highlight text as an emerging data source for ecology. Textual resources carry unique information that can be used in complementarity with geospatial data sources, thus providing insights at the local scale into environmental conditions and properties hidden from more traditional data sources. Leveraging textual information in a spatial context presents several challenges. First, the contribution of textual data remains poorly defined in an ecological context, and it is unclear for which tasks it should be incorporated. Unlike ubiquitous satellite imagery or environmental covariates, the availability of textual data is sparse and irregular; its integration with geospatial data is not straightforward. In response to these challenges, this work proposes an attention-based approach that combines aerial imagery and geolocated text within a spatial neighbourhood, i.e. integrating contributions from several nearby observations. Our approach combines vision and text representations with a geolocation encoding, with an attention-based module that dynamically selects spatial neighbours that are useful for predictive tasks.The proposed approach is applied to the EcoWikiRS dataset, which combines high-resolution aerial imagery with sentences extracted from Wikipedia describing local environmental conditions across Switzerland. Our model is evaluated on the task of predicting 103 environmental variables from the SWECO25 data cube. Our approach consistently outperforms single-location or unimodal, i.e. image-only or text-only, baselines. When analysing variables by thematic groups, results show a significant improvement in performance for climatic, edaphic, population and land use/land cover variables, underscoring the benefit of including the spatial context when combining text and image data.

MaskSDM with Shapley values to improve flexibility, robustness, and explainability in species distribution modeling

Species Distribution Models (SDMs) play a vital role in biodiversity research, conservation planning, and ecological niche modeling by predicting species distributions based on environmental conditions. The selection of predictors is crucial, strongly impacting both model accuracy and how well the predictions reflect ecological patterns. To ensure meaningful insights, input variables must be carefully chosen to match the study objectives and the ecological requirements of the target species. However, existing SDMs, including both traditional and deep learning-based approaches, often lack key capabilities for variable selection: (i) flexibility to choose relevant predictors at inference without retraining; (ii) robustness to handle missing predictor values without compromising accuracy; and (iii) explainability to interpret and accurately quantify each predictor's contribution. To overcome these limitations, we introduce MaskSDM, a novel deep learning-based SDM that enables flexible predictor selection by employing a masked training strategy. This approach allows the model to make predictions with arbitrary subsets of input variables while remaining robust to missing data. It also provides a clearer understanding of how adding or removing a given predictor affects model performance and predictions. Additionally, MaskSDM leverages Shapley values for precise predictor contribution assessments, improving upon traditional approximations. We evaluate MaskSDM on the global sPlotOpen dataset, modeling the distributions of 12,738 plant species. Our results show that MaskSDM outperforms imputation-based methods and approximates models trained on specific subsets of variables. These findings underscore MaskSDM's potential to increase the applicability and adoption of SDMs, laying the groundwork for developing foundation models in SDMs that can be readily applied to diverse ecological applications.