U-DAVI: Uncertainty-Aware Diffusion-Prior-Based Amortized Variational Inference for Image Reconstruction

Ill-posed imaging inverse problems remain challenging due to the ambiguity in mapping degraded observations to clean images. Diffusion-based generative priors have recently shown promise, but typically rely on computationally intensive iterative sampling or per-instance optimization. Amortized variational inference frameworks address this inefficiency by learning a direct mapping from measurements to posteriors, enabling fast posterior sampling without requiring the optimization of a new posterior for every new set of measurements. However, they still struggle to reconstruct fine details and complex textures. To address this, we extend the amortized framework by injecting spatially adaptive perturbations to measurements during training, guided by uncertainty estimates, to emphasize learning in the most uncertain regions. Experiments on deblurring and super-resolution demonstrate that our method achieves superior or competitive performance to previous diffusion-based approaches, delivering more realistic reconstructions without the computational cost of iterative refinement.

Adaptive Protein Tokenization

Tokenization is a promising path to multi-modal models capable of jointly understanding protein sequences, structure, and function. Existing protein structure tokenizers create tokens by pooling information from local neighborhoods, an approach that limits their performance on generative and representation tasks. In this work, we present a method for global tokenization of protein structures in which successive tokens contribute increasing levels of detail to a global representation. This change resolves several issues with generative models based on local protein tokenization: it mitigates error accumulation, provides embeddings without sequence-reduction operations, and allows task-specific adaptation of a tokenized sequence's information content. We validate our method on reconstruction, generative, and representation tasks and demonstrate that it matches or outperforms existing models based on local protein structure tokenizers. We show how adaptive tokens enable inference criteria based on information content, which boosts designability. We validate representations generated from our tokenizer on CATH classification tasks and demonstrate that non-linear probing on our tokenized sequences outperforms equivalent probing on representations from other tokenizers. Finally, we demonstrate how our method supports zero-shot protein shrinking and affinity maturation.