Ulcerative Colitis Mayo Endoscopic Scoring Classification with Active Learning and Generative Data Augmentation

Endoscopic imaging is commonly used to diagnose Ulcerative Colitis (UC) and classify its severity. It has been shown that deep learning based methods are effective in automated analysis of these images and can potentially be used to aid medical doctors. Unleashing the full potential of these methods depends on the availability of large amount of labeled images; however, obtaining and labeling these images are quite challenging. In this paper, we propose a active learning based generative augmentation method. The method involves generating a large number of synthetic samples by training using a small dataset consisting of real endoscopic images. The resulting data pool is narrowed down by using active learning methods to select the most informative samples, which are then used to train a classifier. We demonstrate the effectiveness of our method through experiments on a publicly available endoscopic image dataset. The results show that using synthesized samples in conjunction with active learning leads to improved classification performance compared to using only the original labeled examples and the baseline classification performance of 68.1% increases to 74.5% in terms of Quadratic Weighted Kappa (QWK) Score. Another observation is that, attaining equivalent performance using only real data necessitated three times higher number of images.

Adversarial Image Generation by Spatial Transformation in Perceptual Colorspaces

Deep neural networks are known to be vulnerable to adversarial perturbations. The amount of these perturbations are generally quantified using $L_p$ metrics, such as $L_0$, $L_2$ and $L_\infty$. However, even when the measured perturbations are small, they tend to be noticeable by human observers since $L_p$ distance metrics are not representative of human perception. On the other hand, humans are less sensitive to changes in colorspace. In addition, pixel shifts in a constrained neighborhood are hard to notice. Motivated by these observations, we propose a method that creates adversarial examples by applying spatial transformations, which creates adversarial examples by changing the pixel locations independently to chrominance channels of perceptual colorspaces such as $YC_{b}C_{r}$ and $CIELAB$, instead of making an additive perturbation or manipulating pixel values directly. In a targeted white-box attack setting, the proposed method is able to obtain competitive fooling rates with very high confidence. The experimental evaluations show that the proposed method has favorable results in terms of approximate perceptual distance between benign and adversarially generated images. The source code is publicly available at https://github.com/ayberkydn/stadv-torch

TopoMask: Instance-Mask-Based Formulation for the Road Topology Problem via Transformer-Based Architecture

Driving scene understanding task involves detecting static elements such as lanes, traffic signs, and traffic lights, and their relationships with each other. To facilitate the development of comprehensive scene understanding solutions using multiple camera views, a new dataset called Road Genome (OpenLane-V2) has been released. This dataset allows for the exploration of complex road connections and situations where lane markings may be absent. Instead of using traditional lane markings, the lanes in this dataset are represented by centerlines, which offer a more suitable representation of lanes and their connections. In this study, we have introduced a new approach called TopoMask for predicting centerlines in road topology. Unlike existing approaches in the literature that rely on keypoints or parametric methods, TopoMask utilizes an instance-mask based formulation with a transformer-based architecture and, in order to enrich the mask instances with flow information, a direction label representation is proposed. TopoMask have ranked 4th in the OpenLane-V2 Score (OLS) and ranked 2nd in the F1 score of centerline prediction in OpenLane Topology Challenge 2023. In comparison to the current state-of-the-art method, TopoNet, the proposed method has achieved similar performance in Frechet-based lane detection and outperformed TopoNet in Chamfer-based lane detection without utilizing its scene graph neural network.

Deep Architectures for Content Moderation and Movie Content Rating

Rating a video based on its content is an important step for classifying video age categories. Movie content rating and TV show rating are the two most common rating systems established by professional committees. However, manually reviewing and evaluating scene/film content by a committee is a tedious work and it becomes increasingly difficult with the ever-growing amount of online video content. As such, a desirable solution is to use computer vision based video content analysis techniques to automate the evaluation process. In this paper, related works are summarized for action recognition, multi-modal learning, movie genre classification, and sensitive content detection in the context of content moderation and movie content rating. The project page is available at https://github.com/fcakyon/content-moderation-deep-learning.

Sequence Models for Drone vs Bird Classification

Drone detection has become an essential task in object detection as drone costs have decreased and drone technology has improved. It is, however, difficult to detect distant drones when there is weak contrast, long range, and low visibility. In this work, we propose several sequence classification architectures to reduce the detected false-positive ratio of drone tracks. Moreover, we propose a new drone vs. bird sequence classification dataset to train and evaluate the proposed architectures. 3D CNN, LSTM, and Transformer based sequence classification architectures have been trained on the proposed dataset to show the effectiveness of the proposed idea. As experiments show, using sequence information, bird classification and overall F1 scores can be increased by up to 73% and 35%, respectively. Among all sequence classification models, R(2+1)D-based fully convolutional model yields the best transfer learning and fine-tuning results.

Evaluation and Analysis of Different Aggregation and Hyperparameter Selection Methods for Federated Brain Tumor Segmentation

Availability of large, diverse, and multi-national datasets is crucial for the development of effective and clinically applicable AI systems in the medical imaging domain. However, forming a global model by bringing these datasets together at a central location, comes along with various data privacy and ownership problems. To alleviate these problems, several recent studies focus on the federated learning paradigm, a distributed learning approach for decentralized data. Federated learning leverages all the available data without any need for sharing collaborators' data with each other or collecting them on a central server. Studies show that federated learning can provide competitive performance with conventional central training, while having a good generalization capability. In this work, we have investigated several federated learning approaches on the brain tumor segmentation problem. We explore different strategies for faster convergence and better performance which can also work on strong Non-IID cases.

Slicing Aided Hyper Inference and Fine-tuning for Small Object Detection

Detection of small objects and objects far away in the scene is a major challenge in surveillance applications. Such objects are represented by small number of pixels in the image and lack sufficient details, making them difficult to detect using conventional detectors. In this work, an open-source framework called Slicing Aided Hyper Inference (SAHI) is proposed that provides a generic slicing aided inference and fine-tuning pipeline for small object detection. The proposed technique is generic in the sense that it can be applied on top of any available object detector without any fine-tuning. Experimental evaluations, using object detection baselines on the Visdrone and xView aerial object detection datasets show that the proposed inference method can increase object detection AP by 6.8%, 5.1% and 5.3% for FCOS, VFNet and TOOD detectors, respectively. Moreover, the detection accuracy can be further increased with a slicing aided fine-tuning, resulting in a cumulative increase of 12.7%, 13.4% and 14.5% AP in the same order. Proposed technique has been integrated with Detectron2, MMDetection and YOLOv5 models and it is publicly available at https://github.com/obss/sahi.git .

Class Distance Weighted Cross-Entropy Loss for Ulcerative Colitis Severity Estimation

Endoscopic Mayo score and Ulcerative Colitis Endoscopic Index of Severity are commonly used scoring systems for the assessment of endoscopic severity of ulcerative colitis. They are based on assigning a score in relation to the disease activity, which creates a rank among the levels, making it an ordinal regression problem. On the other hand, most studies use categorical cross-entropy loss function, which is not optimal for the ordinal regression problem, to train the deep learning models. In this study, we propose a novel loss function called class distance weighted cross-entropy (CDW-CE) that respects the order of the classes and takes the distance of the classes into account in calculation of cost. Experimental evaluations show that CDW-CE outperforms the conventional categorical cross-entropy and CORN framework, which is designed for the ordinal regression problems. In addition, CDW-CE does not require any modifications at the output layer and is compatible with the class activation map visualization techniques.

Automated question generation and question answering from Turkish texts using text-to-text transformers

While exam-style questions are a fundamental educational tool serving a variety of purposes, manual construction of questions is a complex process that requires training, experience and resources. To reduce the expenses associated with the manual construction of questions and to satisfy the need for a continuous supply of new questions, automatic question generation (QG) techniques can be utilized. However, compared to automatic question answering (QA), QG is a more challenging task. In this work, we fine-tune a multilingual T5 (mT5) transformer in a multi-task setting for QA, QG and answer extraction tasks using a Turkish QA dataset. To the best of our knowledge, this is the first academic work that attempts to perform automated text-to-text question generation from Turkish texts. Evaluation results show that the proposed multi-task setting achieves state-of-the-art Turkish question answering and question generation performance over TQuADv1, TQuADv2 datasets and XQuAD Turkish split. The source code and pre-trained models are available at https://github.com/obss/turkish-question-generation.