Cloud gap-filling with deep learning for improved grassland monitoring

Uninterrupted optical image time series are crucial for the timely monitoring of agricultural land changes. However, the continuity of such time series is often disrupted by clouds. In response to this challenge, we propose a deep learning method that integrates cloud-free optical (Sentinel-2) observations and weather-independent (Sentinel-1) Synthetic Aperture Radar (SAR) data, using a combined Convolutional Neural Network (CNN)-Recurrent Neural Network (RNN) architecture to generate continuous Normalized Difference Vegetation Index (NDVI) time series. We emphasize the significance of observation continuity by assessing the impact of the generated time series on the detection of grassland mowing events. We focus on Lithuania, a country characterized by extensive cloud coverage, and compare our approach with alternative interpolation techniques (i.e., linear, Akima, quadratic). Our method surpasses these techniques, with an average MAE of 0.024 and R^2 of 0.92. It not only improves the accuracy of event detection tasks by employing a continuous time series, but also effectively filters out sudden shifts and noise originating from cloudy observations that cloud masks often fail to detect.

Evaluating Digital Agriculture Recommendations with Causal Inference

In contrast to the rapid digitalization of several industries, agriculture suffers from low adoption of smart farming tools. While AI-driven digital agriculture tools can offer high-performing predictive functionalities, they lack tangible quantitative evidence on their benefits to the farmers. Field experiments can derive such evidence, but are often costly, time consuming and hence limited in scope and scale of application. To this end, we propose an observational causal inference framework for the empirical evaluation of the impact of digital tools on target farm performance indicators (e.g., yield in this case). This way, we can increase farmers' trust via enhancing the transparency of the digital agriculture market and accelerate the adoption of technologies that aim to secure farmer income resilience and global agricultural sustainability. As a case study, we designed and implemented a recommendation system for the optimal sowing time of cotton based on numerical weather predictions, which was used by a farmers' cooperative during the growing season of 2021. We then leverage agricultural knowledge, collected yield data, and environmental information to develop a causal graph of the farm system. Using the back-door criterion, we identify the impact of sowing recommendations on the yield and subsequently estimate it using linear regression, matching, inverse propensity score weighting and meta-learners. The results reveal that a field sown according to our recommendations exhibited a statistically significant yield increase that ranged from 12% to 17%, depending on the method. The effect estimates were robust, as indicated by the agreement among the estimation methods and four successful refutation tests. We argue that this approach can be implemented for decision support systems of other fields, extending their evaluation beyond a performance assessment of internal functionalities.

Fuzzy clustering for the within-season estimation of cotton phenology

Crop phenology is crucial information for crop yield estimation and agricultural management. Traditionally, phenology has been observed from the ground; however Earth observation, weather and soil data have been used to capture the physiological growth of crops. In this work, we propose a new approach for the within-season phenology estimation for cotton at the field level. For this, we exploit a variety of Earth observation vegetation indices (derived from Sentinel-2) and numerical simulations of atmospheric and soil parameters. Our method is unsupervised to address the ever-present problem of sparse and scarce ground truth data that makes most supervised alternatives impractical in real-world scenarios. We applied fuzzy c-means clustering to identify the principal phenological stages of cotton and then used the cluster membership weights to further predict the transitional phases between adjacent stages. In order to evaluate our models, we collected 1,285 crop growth ground observations in Orchomenos, Greece. We introduced a new collection protocol, assigning up to two phenology labels that represent the primary and secondary growth stage in the field and thus indicate when stages are transitioning. Our model was tested against a baseline model that allowed to isolate the random agreement and evaluate its true competence. The results showed that our model considerably outperforms the baseline one, which is promising considering the unsupervised nature of the approach. The limitations and the relevant future work are thoroughly discussed. The ground observations are formatted in an ready-to-use dataset and will be available at https://github.com/Agri-Hub/cotton-phenology-dataset upon publication.

Towards Global Crop Maps with Transfer Learning

The continuous increase in global population and the impact of climate change on crop production are expected to affect the food sector significantly. In this context, there is need for timely, large-scale and precise mapping of crops for evidence-based decision making. A key enabler towards this direction are new satellite missions that freely offer big remote sensing data of high spatio-temporal resolution and global coverage. During the previous decade and because of this surge of big Earth observations, deep learning methods have dominated the remote sensing and crop mapping literature. Nevertheless, deep learning models require large amounts of annotated data that are scarce and hard-to-acquire. To address this problem, transfer learning methods can be used to exploit available annotations and enable crop mapping for other regions, crop types and years of inspection. In this work, we have developed and trained a deep learning model for paddy rice detection in South Korea using Sentinel-1 VH time-series. We then fine-tune the model for i) paddy rice detection in France and Spain and ii) barley detection in the Netherlands. Additionally, we propose a modification in the pre-trained weights in order to incorporate extra input features (Sentinel-1 VV). Our approach shows excellent performance when transferring in different areas for the same crop type and rather promising results when transferring in a different area and crop type.

Evaluating Digital Tools for Sustainable Agriculture using Causal Inference

In contrast to the rapid digitalization of several industries, agriculture suffers from low adoption of climate-smart farming tools. Even though AI-driven digital agriculture can offer high-performing predictive functionalities, it lacks tangible quantitative evidence on its benefits to the farmers. Field experiments can derive such evidence, but are often costly and time consuming. To this end, we propose an observational causal inference framework for the empirical evaluation of the impact of digital tools on target farm performance indicators. This way, we can increase farmers' trust by enhancing the transparency of the digital agriculture market, and in turn accelerate the adoption of technologies that aim to increase productivity and secure a sustainable and resilient agriculture against a changing climate. As a case study, we perform an empirical evaluation of a recommendation system for optimal cotton sowing, which was used by a farmers' cooperative during the growing season of 2021. We leverage agricultural knowledge to develop a causal graph of the farm system, we use the back-door criterion to identify the impact of recommendations on the yield and subsequently estimate it using several methods on observational data. The results show that a field sown according to our recommendations enjoyed a significant increase in yield (12% to 17%).

A Data Cube of Big Satellite Image Time-Series for Agriculture Monitoring

The modernization of the Common Agricultural Policy (CAP) requires the large scale and frequent monitoring of agricultural land. Towards this direction, the free and open satellite data (i.e., Sentinel missions) have been extensively used as the sources for the required high spatial and temporal resolution Earth observations. Nevertheless, monitoring the CAP at large scales constitutes a big data problem and puts a strain on CAP paying agencies that need to adapt fast in terms of infrastructure and know-how. Hence, there is a need for efficient and easy-to-use tools for the acquisition, storage, processing and exploitation of big satellite data. In this work, we present the Agriculture monitoring Data Cube (ADC), which is an automated, modular, end-to-end framework for discovering, pre-processing and indexing optical and Synthetic Aperture Radar (SAR) images into a multidimensional cube. We also offer a set of powerful tools on top of the ADC, including i) the generation of analysis-ready feature spaces of big satellite data to feed downstream machine learning tasks and ii) the support of Satellite Image Time-Series (SITS) analysis via services pertinent to the monitoring of the CAP (e.g., detecting trends and events, monitoring the growth status etc.). The knowledge extracted from the SITS analyses and the machine learning tasks returns to the data cube, building scalable country-specific knowledge bases that can efficiently answer complex and multi-faceted geospatial queries.

Towards Space-to-Ground Data Availability for Agriculture Monitoring

The recent advances in machine learning and the availability of free and open big Earth data (e.g., Sentinel missions), which cover large areas with high spatial and temporal resolution, have enabled many agriculture monitoring applications. One example is the control of subsidy allocations of the Common Agricultural Policy (CAP). Advanced remote sensing systems have been developed towards the large-scale evidence-based monitoring of the CAP. Nevertheless, the spatial resolution of satellite images is not always adequate to make accurate decisions for all fields. In this work, we introduce the notion of space-to-ground data availability, i.e., from the satellite to the field, in an attempt to make the best out of the complementary characteristics of the different sources. We present a space-to-ground dataset that contains Sentinel-1 radar and Sentinel-2 optical image time-series, as well as street-level images from the crowdsourcing platform Mapillary, for grassland fields in the area of Utrecht for 2017. The multifaceted utility of our dataset is showcased through the downstream task of grassland classification. We train machine and deep learning algorithms on these different data domains and highlight the potential of fusion techniques towards increasing the reliability of decisions.