We investigate robust direction-of-arrival (DoA) estimation for sensor arrays operating in adverse weather conditions, where weather-induced distortions degrade estimation accuracy. Building on a physics-based $S$-matrix model established in prior work, we adopt a statistical characterization of random phase and amplitude distortions caused by multiple scattering in rain. Based on this model, we develop a measurement framework for uniform linear arrays (ULAs) that explicitly incorporates such distortions. To mitigate their impact, we exploit the Hermitian Toeplitz (HT) structure of the covariance matrix to reduce the number of parameters to be estimated. We then apply a generalized least squares (GLS) approach for calibration. Simulation results show that the proposed method effectively suppresses rain-induced distortions, improves DoA estimation accuracy, and enhances radar sensing performance in challenging weather conditions.