High-fidelity numerical simulations of chaotic, high dimensional nonlinear dynamical systems are computationally expensive, necessitating the development of efficient surrogate models. Most surrogate models for such systems are deterministic, for example when neural operators are involved. However, deterministic models often fail to capture the intrinsic distributional uncertainty of chaotic systems. This work presents a surrogate modeling formulation that leverages generative machine learning, where a deep learning diffusion model is used to probabilistically forecast turbulent flows over long horizons. We introduce a multi-step autoregressive diffusion objective that significantly enhances long-rollout stability compared to standard single-step training. To handle complex, unstructured geometries, we utilize a multi-scale graph transformer architecture incorporating diffusion preconditioning and voxel-grid pooling. More importantly, our modeling framework provides a unified platform that also predicts spatiotemporally important locations for sensor placement, either via uncertainty estimates or through an error-estimation module. Finally, the observations of the ground truth state at these dynamically varying sensor locations are assimilated using diffusion posterior sampling requiring no retraining of the surrogate model. We present our methodology on two-dimensional homogeneous and isotropic turbulence and for a flow over a backwards-facing step, demonstrating its utility in forecasting, adaptive sensor placement, and data assimilation for high dimensional chaotic systems.