Habitat classification from satellite observations with sparse annotations

Remote sensing benefits habitat conservation by making monitoring of large areas easier compared to field surveying especially if the remote sensed data can be automatically analyzed. An important aspect of monitoring is classifying and mapping habitat types present in the monitored area. Automatic classification is a difficult task, as classes have fine-grained differences and their distributions are long-tailed and unbalanced. Usually training data used for automatic land cover classification relies on fully annotated segmentation maps, annotated from remote sensed imagery to a fairly high-level taxonomy, i.e., classes such as forest, farmland, or urban area. A challenge with automatic habitat classification is that reliable data annotation requires field-surveys. Therefore, full segmentation maps are expensive to produce, and training data is often sparse, point-like, and limited to areas accessible by foot. Methods for utilizing these limited data more efficiently are needed. We address these problems by proposing a method for habitat classification and mapping, and apply this method to classify the entire northern Finnish Lapland area into Natura2000 classes. The method is characterized by using finely-grained, sparse, single-pixel annotations collected from the field, combined with large amounts of unannotated data to produce segmentation maps. Supervised, unsupervised and semi-supervised methods are compared, and the benefits of transfer learning from a larger out-of-domain dataset are demonstrated. We propose a \ac{CNN} biased towards center pixel classification ensembled with a random forest classifier, that produces higher quality classifications than the models themselves alone. We show that cropping augmentations, test-time augmentation and semi-supervised learning can help classification even further.