Dynamic Programming for Instance Annotation in Multi-instance Multi-label Learning

Labeling data for classification requires significant human effort. To reduce labeling cost, instead of labeling every instance, a group of instances (bag) is labeled by a single bag label. Computer algorithms are then used to infer the label for each instance in a bag, a process referred to as instance annotation. This task is challenging due to the ambiguity regarding the instance labels. We propose a discriminative probabilistic model for the instance annotation problem and introduce an expectation maximization framework for inference, based on the maximum likelihood approach. For many probabilistic approaches, brute-force computation of the instance label posterior probability given its bag label is exponential in the number of instances in the bag. Our key contribution is a dynamic programming method for computing the posterior that is linear in the number of instances. We evaluate our methods using both benchmark and real world data sets, in the domain of bird song, image annotation, and activity recognition. In many cases, the proposed framework outperforms, sometimes significantly, the current state-of-the-art MIML learning methods, both in instance label prediction and bag label prediction.

Novelty Detection Under Multi-Instance Multi-Label Framework

Novelty detection plays an important role in machine learning and signal processing. This paper studies novelty detection in a new setting where the data object is represented as a bag of instances and associated with multiple class labels, referred to as multi-instance multi-label (MIML) learning. Contrary to the common assumption in MIML that each instance in a bag belongs to one of the known classes, in novelty detection, we focus on the scenario where bags may contain novel-class instances. The goal is to determine, for any given instance in a new bag, whether it belongs to a known class or a novel class. Detecting novelty in the MIML setting captures many real-world phenomena and has many potential applications. For example, in a collection of tagged images, the tag may only cover a subset of objects existing in the images. Discovering an object whose class has not been previously tagged can be useful for the purpose of soliciting a label for the new object class. To address this novel problem, we present a discriminative framework for detecting new class instances. Experiments demonstrate the effectiveness of our proposed method, and reveal that the presence of unlabeled novel instances in training bags is helpful to the detection of such instances in testing stage.

Empirical estimation of entropy functionals with confidence

This paper introduces a class of k-nearest neighbor ($k$-NN) estimators called bipartite plug-in (BPI) estimators for estimating integrals of non-linear functions of a probability density, such as Shannon entropy and R\'enyi entropy. The density is assumed to be smooth, have bounded support, and be uniformly bounded from below on this set. Unlike previous $k$-NN estimators of non-linear density functionals, the proposed estimator uses data-splitting and boundary correction to achieve lower mean square error. Specifically, we assume that $T$ i.i.d. samples ${X}_i \in \mathbb{R}^d$ from the density are split into two pieces of cardinality $M$ and $N$ respectively, with $M$ samples used for computing a k-nearest-neighbor density estimate and the remaining $N$ samples used for empirical estimation of the integral of the density functional. By studying the statistical properties of k-NN balls, explicit rates for the bias and variance of the BPI estimator are derived in terms of the sample size, the dimension of the samples and the underlying probability distribution. Based on these results, it is possible to specify optimal choice of tuning parameters $M/T$, $k$ for maximizing the rate of decrease of the mean square error (MSE). The resultant optimized BPI estimator converges faster and achieves lower mean squared error than previous $k$-NN entropy estimators. In addition, a central limit theorem is established for the BPI estimator that allows us to specify tight asymptotic confidence intervals.

An Information Geometric Framework for Dimensionality Reduction

This report concerns the problem of dimensionality reduction through information geometric methods on statistical manifolds. While there has been considerable work recently presented regarding dimensionality reduction for the purposes of learning tasks such as classification, clustering, and visualization, these methods have focused primarily on Riemannian manifolds in Euclidean space. While sufficient for many applications, there are many high-dimensional signals which have no straightforward and meaningful Euclidean representation. In these cases, signals may be more appropriately represented as a realization of some distribution lying on a statistical manifold, or a manifold of probability density functions (PDFs). We present a framework for dimensionality reduction that uses information geometry for both statistical manifold reconstruction as well as dimensionality reduction in the data domain.

Information Preserving Component Analysis: Data Projections for Flow Cytometry Analysis

Flow cytometry is often used to characterize the malignant cells in leukemia and lymphoma patients, traced to the level of the individual cell. Typically, flow cytometric data analysis is performed through a series of 2-dimensional projections onto the axes of the data set. Through the years, clinicians have determined combinations of different fluorescent markers which generate relatively known expression patterns for specific subtypes of leukemia and lymphoma -- cancers of the hematopoietic system. By only viewing a series of 2-dimensional projections, the high-dimensional nature of the data is rarely exploited. In this paper we present a means of determining a low-dimensional projection which maintains the high-dimensional relationships (i.e. information) between differing oncological data sets. By using machine learning techniques, we allow clinicians to visualize data in a low dimension defined by a linear combination of all of the available markers, rather than just 2 at a time. This provides an aid in diagnosing similar forms of cancer, as well as a means for variable selection in exploratory flow cytometric research. We refer to our method as Information Preserving Component Analysis (IPCA).

Classification Constrained Dimensionality Reduction

Dimensionality reduction is a topic of recent interest. In this paper, we present the classification constrained dimensionality reduction (CCDR) algorithm to account for label information. The algorithm can account for multiple classes as well as the semi-supervised setting. We present an out-of-sample expressions for both labeled and unlabeled data. For unlabeled data, we introduce a method of embedding a new point as preprocessing to a classifier. For labeled data, we introduce a method that improves the embedding during the training phase using the out-of-sample extension. We investigate classification performance using the CCDR algorithm on hyper-spectral satellite imagery data. We demonstrate the performance gain for both local and global classifiers and demonstrate a 10% improvement of the $k$-nearest neighbors algorithm performance. We present a connection between intrinsic dimension estimation and the optimal embedding dimension obtained using the CCDR algorithm.

FINE: Fisher Information Non-parametric Embedding

We consider the problems of clustering, classification, and visualization of high-dimensional data when no straightforward Euclidean representation exists. Typically, these tasks are performed by first reducing the high-dimensional data to some lower dimensional Euclidean space, as many manifold learning methods have been developed for this task. In many practical problems however, the assumption of a Euclidean manifold cannot be justified. In these cases, a more appropriate assumption would be that the data lies on a statistical manifold, or a manifold of probability density functions (PDFs). In this paper we propose using the properties of information geometry in order to define similarities between data sets using the Fisher information metric. We will show this metric can be approximated using entirely non-parametric methods, as the parameterization of the manifold is generally unknown. Furthermore, by using multi-dimensional scaling methods, we are able to embed the corresponding PDFs into a low-dimensional Euclidean space. This not only allows for classification of the data, but also visualization of the manifold. As a whole, we refer to our framework as Fisher Information Non-parametric Embedding (FINE), and illustrate its uses on a variety of practical problems, including bio-medical applications and document classification.