MetaSAEs: Joint Training with a Decomposability Penalty Produces More Atomic Sparse Autoencoder Latents

Sparse autoencoders (SAEs) are increasingly used for safety-relevant applications including alignment detection and model steering. These use cases require SAE latents to be as atomic as possible. Each latent should represent a single coherent concept drawn from a single underlying representational subspace. In practice, SAE latents blend representational subspaces together. A single feature can activate across semantically distinct contexts that share no true common representation, muddying an already complex picture of model computation. We introduce a joint training objective that directly penalizes this subspace blending. A small meta SAE is trained alongside the primary SAE to sparsely reconstruct the primary SAE's decoder columns; the primary SAE is penalized whenever its decoder directions are easy to reconstruct from the meta dictionary. This occurs whenever latent directions lie in a subspace spanned by other primary directions. This creates gradient pressure toward more mutually independent decoder directions that resist sparse meta-compression. On GPT-2 large (layer 20), the selected configuration reduces mean $|\varphi|$ by 7.5% relative to an identical solo SAE trained on the same data. Automated interpretability (fuzzing) scores improve by 7.6%, providing external validation of the atomicity gain independent of the training and co-occurrence metrics. Reconstruction overhead is modest. Results on Gemma 2 9B are directional. On not-fully-converged SAEs, the same parameterization yields the best results, a $+8.6\%$ $Δ$Fuzz. Though directional, this is an encouraging sign that the method transfers to a larger model. Qualitative analysis confirms that features firing on polysemantic tokens are split into semantically distinct sub-features, each specializing in a distinct representational subspace.

Finding Belief Geometries with Sparse Autoencoders

Understanding the geometric structure of internal representations is a central goal of mechanistic interpretability. Prior work has shown that transformers trained on sequences generated by hidden Markov models encode probabilistic belief states as simplex-shaped geometries in their residual stream, with vertices corresponding to latent generative states. Whether large language models trained on naturalistic text develop analogous geometric representations remains an open question. We introduce a pipeline for discovering candidate simplex-structured subspaces in transformer representations, combining sparse autoencoders (SAEs), $k$-subspace clustering of SAE features, and simplex fitting using AANet. We validate the pipeline on a transformer trained on a multipartite hidden Markov model with known belief-state geometry. Applied to Gemma-2-9B, we identify 13 priority clusters exhibiting candidate simplex geometry ($K \geq 3$). A key challenge is distinguishing genuine belief-state encoding from tiling artifacts: latents can span a simplex-shaped subspace without the mixture coordinates carrying predictive signal beyond any individual feature. We therefore adopt barycentric prediction as our primary discriminating test. Among the 13 priority clusters, 3 exhibit a highly significant advantage on near-vertex samples (Wilcoxon $p < 10^{-14}$) and 4 on simplex-interior samples. Together 5 distinct real clusters pass at least one split, while no null cluster passes either. One cluster, 768_596, additionally achieves the highest causal steering score in the dataset. This is the only case where passive prediction and active intervention converge. We present these findings as preliminary evidence that genuine belief-like geometry exists in Gemma-2-9B's representation space, and identify the structured evaluation that would be required to confirm this interpretation.