A Unified Multi-Phase CT Synthesis and Classification Framework for Kidney Cancer Diagnosis with Incomplete Data

Multi-phase CT is widely adopted for the diagnosis of kidney cancer due to the complementary information among phases. However, the complete set of multi-phase CT is often not available in practical clinical applications. In recent years, there have been some studies to generate the missing modality image from the available data. Nevertheless, the generated images are not guaranteed to be effective for the diagnosis task. In this paper, we propose a unified framework for kidney cancer diagnosis with incomplete multi-phase CT, which simultaneously recovers missing CT images and classifies cancer subtypes using the completed set of images. The advantage of our framework is that it encourages a synthesis model to explicitly learn to generate missing CT phases that are helpful for classifying cancer subtypes. We further incorporate lesion segmentation network into our framework to exploit lesion-level features for effective cancer classification in the whole CT volumes. The proposed framework is based on fully 3D convolutional neural networks to jointly optimize both synthesis and classification of 3D CT volumes. Extensive experiments on both in-house and external datasets demonstrate the effectiveness of our framework for the diagnosis with incomplete data compared with state-of-the-art baselines. In particular, cancer subtype classification using the completed CT data by our method achieves higher performance than the classification using the given incomplete data.

Exploring 3D U-Net Training Configurations and Post-Processing Strategies for the MICCAI 2023 Kidney and Tumor Segmentation Challenge

In 2023, it is estimated that 81,800 kidney cancer cases will be newly diagnosed, and 14,890 people will die from this cancer in the United States. Preoperative dynamic contrast-enhanced abdominal computed tomography (CT) is often used for detecting lesions. However, there exists inter-observer variability due to subtle differences in the imaging features of kidney and kidney tumors. In this paper, we explore various 3D U-Net training configurations and effective post-processing strategies for accurate segmentation of kidneys, cysts, and kidney tumors in CT images. We validated our model on the dataset of the 2023 Kidney and Kidney Tumor Segmentation (KiTS23) challenge. Our method took second place in the final ranking of the KiTS23 challenge on unseen test data with an average Dice score of 0.820 and an average Surface Dice of 0.712.

W-Net: Two-stage U-Net with misaligned data for raw-to-RGB mapping

Recent research on learning a mapping between raw Bayer images and RGB images has progressed with the development of deep convolutional neural networks. A challenging data set namely the Zurich Raw-to-RGB data set (ZRR) has been released in the AIM 2019 raw-to-RGB mapping challenge. In ZRR, input raw and target RGB images are captured by two different cameras and thus not perfectly aligned. Moreover, camera metadata such as white balance gains and color correction matrix are not provided, which makes the challenge more difficult. In this paper, we explore an effective network structure and a loss function to address these issues. We exploit a two-stage U-Net architecture and also introduce a loss function that is less variant to alignment and more sensitive to color differences. In addition, we show an ensemble of networks trained with different loss functions can bring a significant performance gain. We demonstrate the superiority of our method by achieving the highest score in terms of both the peak signal-to-noise ratio and the structural similarity and obtaining the second-best mean-opinion-score in the challenge.