A Practical Entity Linking System for Tables in Scientific Literature

Entity linking is an important step towards constructing knowledge graphs that facilitate advanced question answering over scientific documents, including the retrieval of relevant information included in tables within these documents. This paper introduces a general-purpose system for linking entities to items in the Wikidata knowledge base. It describes how we adapt this system for linking domain-specific entities, especially for those entities embedded within tables drawn from COVID-19-related scientific literature. We describe the setup of an efficient offline instance of the system that enables our entity-linking approach to be more feasible in practice. As part of a broader approach to infer the semantic meaning of scientific tables, we leverage the structural and semantic characteristics of the tables to improve overall entity linking performance.

SemTK: An Ontology-first, Open Source Semantic Toolkit for Managing and Querying Knowledge Graphs

The relatively recent adoption of Knowledge Graphs as an enabling technology in multiple high-profile artificial intelligence and cognitive applications has led to growing interest in the Semantic Web technology stack. Many semantics-related tools, however, are focused on serving experts with a deep understanding of semantic technologies. For example, triplification of relational data is available but there is no open source tool that allows a user unfamiliar with OWL/RDF to import data into a semantic triple store in an intuitive manner. Further, many tools require users to have a working understanding of SPARQL to query data. Casual users interested in benefiting from the power of Knowledge Graphs have few tools available for exploring, querying, and managing semantic data. We present SemTK, the Semantics Toolkit, a user-friendly suite of tools that allow both expert and non-expert semantics users convenient ingestion of relational data, simplified query generation, and more. The exploration of ontologies and instance data is performed through SPARQLgraph, an intuitive web-based user interface in SemTK understandable and navigable by a lay user. The open source version of SemTK is available at http://semtk.research.ge.com