Stimulus-Evoked Network Dynamics in Human Cortical Organoids: From a Graph-Computational Framework to Repeated-Stimulation Depression

Human cortical organoids provide an experimentally accessible model of early neural circuit formation, yet whether their activity reflects structured information processing rather than spontaneous synchronization is unclear. We developed a graph-computational framework to quantify stimulus-evoked propagation. This includes stimulus-conditioned functional graphs, a graph-constrained dynamical (graph-neural-network) model used as a system-identification tool, a biological message-passing principle bounding integration depth by observable propagation depth, and a suite of graph-level metrics. We carried this program out in full on longitudinal HD-MEA recordings from three organoids. Once the true acquisition sampling rate and stimulus timing were recovered, the evoked response proved to be a fast, near-synchronous network burst with no measurable outward propagation (peak-latency vs. distance slope = 0). The propagation/integration-depth metrics (Deff ,reachability index, dmax) therefore do not apply, and per-day connectivity graphs were not reliably estimable at the available trial count, a negative result with methodological consequences for applying such metrics to organoid data. Reframing around synchrony, response-population size and shared variability revealed a control-validated phenomenon, i.e., repeated daily stimulation progressively depressed and spatially contracted the evoked response. That repeated stimulation reshapes organoid networks is established, but longitudinal designs in which every preparation is stimulated cannot separate this from developmental maturation. We break that confound with a developmentally-matched, stimulation-naive control, where at day 7, an organoid receiving its first-ever stimulation engaged 93% of the array, whereas organoids with five prior sessions engaged 10%.

Using deep learning for predicting cleansing quality of colon capsule endoscopy images

In this study, we explore the application of deep learning techniques for predicting cleansing quality in colon capsule endoscopy (CCE) images. Using a dataset of 500 images labeled by 14 clinicians on the Leighton-Rex scale (Poor, Fair, Good, and Excellent), a ResNet-18 model was trained for classification, leveraging stratified K-fold cross-validation to ensure robust performance. To optimize the model, structured pruning techniques were applied iteratively, achieving significant sparsity while maintaining high accuracy. Explainability of the pruned model was evaluated using Grad-CAM, Grad-CAM++, Eigen-CAM, Ablation-CAM, and Random-CAM, with the ROAD method employed for consistent evaluation. Our results indicate that for a pruned model, we can achieve a cross-validation accuracy of 88% with 79% sparsity, demonstrating the effectiveness of pruning in improving efficiency from 84% without compromising performance. We also highlight the challenges of evaluating cleansing quality of CCE images, emphasize the importance of explainability in clinical applications, and discuss the challenges associated with using the ROAD method for our task. Finally, we employ a variant of adaptive temperature scaling to calibrate the pruned models for an external dataset.

Towards Full Integration of Artificial Intelligence in Colon Capsule Endoscopy's Pathway

Despite recent surge of interest in deploying colon capsule endoscopy (CCE) for early diagnosis of colorectal diseases, there remains a large gap between the current state of CCE in clinical practice, and the state of its counterpart optical colonoscopy (OC). Our study is aimed at closing this gap, by focusing on the full integration of AI in CCE's pathway, where image processing steps linked to the detection, localization and characterisation of important findings are carried out autonomously using various AI algorithms. We developed a recognition network, that with an impressive sensitivity of 99.9%, a specificity of 99.4%, and a negative predictive value (NPV) of 99.8%, detected colorectal polyps. After recognising a polyp within a sequence of images, only those images containing polyps were fed into two parallel independent networks for characterisation, and estimation of the size of those important findings. The characterisation network reached a sensitivity of 82% and a specificity of 80% in classifying polyps to two groups, namely neoplastic vs. non-neoplastic. The size estimation network reached an accuracy of 88% in correctly segmenting the polyps. By automatically incorporating this crucial information into CCE's pathway, we moved a step closer towards the full integration of AI in CCE's routine clinical practice.