funLOCI: a local clustering algorithm for functional data

Nowadays, more and more problems are dealing with data with one infinite continuous dimension: functional data. In this paper, we introduce the funLOCI algorithm which allows to identify functional local clusters or functional loci, i.e., subsets/groups of functions exhibiting similar behaviour across the same continuous subset of the domain. The definition of functional local clusters leverages ideas from multivariate and functional clustering and biclustering and it is based on an additive model which takes into account the shape of the curves. funLOCI is a three-step algorithm based on divisive hierarchical clustering. The use of dendrograms allows to visualize and to guide the searching procedure and the cutting thresholds selection. To deal with the large quantity of local clusters, an extra step is implemented to reduce the number of results to the minimum.

On the bias of H-scores for comparing biclusters, and how to correct it

In the last two decades several biclustering methods have been developed as new unsupervised learning techniques to simultaneously cluster rows and columns of a data matrix. These algorithms play a central role in contemporary machine learning and in many applications, e.g. to computational biology and bioinformatics. The H-score is the evaluation score underlying the seminal biclustering algorithm by Cheng and Church, as well as many other subsequent biclustering methods. In this paper, we characterize a potentially troublesome bias in this score, that can distort biclustering results. We prove, both analytically and by simulation, that the average H-score increases with the number of rows/columns in a bicluster. This makes the H-score, and hence all algorithms based on it, biased towards small clusters. Based on our analytical proof, we are able to provide a straightforward way to correct this bias, allowing users to accurately compare biclusters.