Persistent Laplacian-enhanced Algorithm for Scarcely Labeled Data Classification

The success of many machine learning (ML) methods depends crucially on having large amounts of labeled data. However, obtaining enough labeled data can be expensive, time-consuming, and subject to ethical constraints for many applications. One approach that has shown tremendous value in addressing this challenge is semi-supervised learning (SSL); this technique utilizes both labeled and unlabeled data during training, often with much less labeled data than unlabeled data, which is often relatively easy and inexpensive to obtain. In fact, SSL methods are particularly useful in applications where the cost of labeling data is especially expensive, such as medical analysis, natural language processing (NLP), or speech recognition. A subset of SSL methods that have achieved great success in various domains involves algorithms that integrate graph-based techniques. These procedures are popular due to the vast amount of information provided by the graphical framework and the versatility of their applications. In this work, we propose an algebraic topology-based semi-supervised method called persistent Laplacian-enhanced graph MBO (PL-MBO) by integrating persistent spectral graph theory with the classical Merriman-Bence- Osher (MBO) scheme. Specifically, we use a filtration procedure to generate a sequence of chain complexes and associated families of simplicial complexes, from which we construct a family of persistent Laplacians. Overall, it is a very efficient procedure that requires much less labeled data to perform well compared to many ML techniques, and it can be adapted for both small and large datasets. We evaluate the performance of the proposed method on data classification, and the results indicate that the proposed technique outperforms other existing semi-supervised algorithms.

Integrating Transformer and Autoencoder Techniques with Spectral Graph Algorithms for the Prediction of Scarcely Labeled Molecular Data

In molecular and biological sciences, experiments are expensive, time-consuming, and often subject to ethical constraints. Consequently, one often faces the challenging task of predicting desirable properties from small data sets or scarcely-labeled data sets. Although transfer learning can be advantageous, it requires the existence of a related large data set. This work introduces three graph-based models incorporating Merriman-Bence-Osher (MBO) techniques to tackle this challenge. Specifically, graph-based modifications of the MBO scheme is integrated with state-of-the-art techniques, including a home-made transformer and an autoencoder, in order to deal with scarcely-labeled data sets. In addition, a consensus technique is detailed. The proposed models are validated using five benchmark data sets. We also provide a thorough comparison to other competing methods, such as support vector machines, random forests, and gradient boosted decision trees, which are known for their good performance on small data sets. The performances of various methods are analyzed using residue-similarity (R-S) scores and R-S indices. Extensive computational experiments and theoretical analysis show that the new models perform very well even when as little as 1% of the data set is used as labeled data.

Multiscale Laplacian Learning

Machine learning methods have greatly changed science, engineering, finance, business, and other fields. Despite the tremendous accomplishments of machine learning and deep learning methods, many challenges still remain. In particular, the performance of machine learning methods is often severely affected in case of diverse data, usually associated with smaller data sets or data related to areas of study where the size of the data sets is constrained by the complexity and/or high cost of experiments. Moreover, data with limited labeled samples is a challenge to most learning approaches. In this paper, the aforementioned challenges are addressed by integrating graph-based frameworks, multiscale structure, modified and adapted optimization procedures and semi-supervised techniques. This results in two innovative multiscale Laplacian learning (MLL) approaches for machine learning tasks, such as data classification, and for tackling diverse data, data with limited samples and smaller data sets. The first approach, called multikernel manifold learning (MML), integrates manifold learning with multikernel information and solves a regularization problem consisting of a loss function and a warped kernel regularizer using multiscale graph Laplacians. The second approach, called the multiscale MBO (MMBO) method, introduces multiscale Laplacians to a modification of the famous classical Merriman-Bence-Osher (MBO) scheme, and makes use of fast solvers for finding the approximations to the extremal eigenvectors of the graph Laplacian. We demonstrate the performance of our methods experimentally on a variety of data sets, such as biological, text and image data, and compare them favorably to existing approaches.

Multiclass Data Segmentation using Diffuse Interface Methods on Graphs

We present two graph-based algorithms for multiclass segmentation of high-dimensional data. The algorithms use a diffuse interface model based on the Ginzburg-Landau functional, related to total variation compressed sensing and image processing. A multiclass extension is introduced using the Gibbs simplex, with the functional's double-well potential modified to handle the multiclass case. The first algorithm minimizes the functional using a convex splitting numerical scheme. The second algorithm is a uses a graph adaptation of the classical numerical Merriman-Bence-Osher (MBO) scheme, which alternates between diffusion and thresholding. We demonstrate the performance of both algorithms experimentally on synthetic data, grayscale and color images, and several benchmark data sets such as MNIST, COIL and WebKB. We also make use of fast numerical solvers for finding the eigenvectors and eigenvalues of the graph Laplacian, and take advantage of the sparsity of the matrix. Experiments indicate that the results are competitive with or better than the current state-of-the-art multiclass segmentation algorithms.