Kernel Biclustering algorithm in Hilbert Spaces

Biclustering algorithms partition data and covariates simultaneously, providing new insights in several domains, such as analyzing gene expression to discover new biological functions. This paper develops a new model-free biclustering algorithm in abstract spaces using the notions of energy distance (ED) and the maximum mean discrepancy (MMD) -- two distances between probability distributions capable of handling complex data such as curves or graphs. The proposed method can learn more general and complex cluster shapes than most existing literature approaches, which usually focus on detecting mean and variance differences. Although the biclustering configurations of our approach are constrained to create disjoint structures at the datum and covariate levels, the results are competitive. Our results are similar to state-of-the-art methods in their optimal scenarios, assuming a proper kernel choice, outperforming them when cluster differences are concentrated in higher-order moments. The model's performance has been tested in several situations that involve simulated and real-world datasets. Finally, new theoretical consistency results are established using some tools of the theory of optimal transport.

Discussion of `Multiscale Fisher's Independence Test for Multivariate Dependence'

We discuss how MultiFIT, the Multiscale Fisher's Independence Test for Multivariate Dependence proposed by Gorsky and Ma (2022), compares to existing linear-time kernel tests based on the Hilbert-Schmidt independence criterion (HSIC). We highlight the fact that the levels of the kernel tests at any finite sample size can be controlled exactly, as it is the case with the level of MultiFIT. In our experiments, we observe some of the performance limitations of MultiFIT in terms of test power.

Explaining Preferences with Shapley Values

While preference modelling is becoming one of the pillars of machine learning, the problem of preference explanation remains challenging and underexplored. In this paper, we propose \textsc{Pref-SHAP}, a Shapley value-based model explanation framework for pairwise comparison data. We derive the appropriate value functions for preference models and further extend the framework to model and explain \emph{context specific} information, such as the surface type in a tennis game. To demonstrate the utility of \textsc{Pref-SHAP}, we apply our method to a variety of synthetic and real-world datasets and show that richer and more insightful explanations can be obtained over the baseline.

Generalized Variational Inference in Function Spaces: Gaussian Measures meet Bayesian Deep Learning

We develop a framework for generalized variational inference in infinite-dimensional function spaces and use it to construct a method termed Gaussian Wasserstein inference (GWI). GWI leverages the Wasserstein distance between Gaussian measures on the Hilbert space of square-integrable functions in order to determine a variational posterior using a tractable optimisation criterion and avoids pathologies arising in standard variational function space inference. An exciting application of GWI is the ability to use deep neural networks in the variational parametrisation of GWI, combining their superior predictive performance with the principled uncertainty quantification analogous to that of Gaussian processes. The proposed method obtains state-of-the-art performance on several benchmark datasets.

AODisaggregation: toward global aerosol vertical profiles

Aerosol-cloud interactions constitute the largest source of uncertainty in assessments of the anthropogenic climate change. This uncertainty arises in part from the difficulty in measuring the vertical distributions of aerosols, and only sporadic vertically resolved observations are available. We often have to settle for less informative vertically aggregated proxies such as aerosol optical depth (AOD). In this work, we develop a framework for the vertical disaggregation of AOD into extinction profiles, i.e. the measure of light extinction throughout an atmospheric column, using readily available vertically resolved meteorological predictors such as temperature, pressure or relative humidity. Using Bayesian nonparametric modelling, we devise a simple Gaussian process prior over aerosol vertical profiles and update it with AOD observations to infer a distribution over vertical extinction profiles. To validate our approach, we use ECHAM-HAM aerosol-climate model data which offers self-consistent simulations of meteorological covariates, AOD and extinction profiles. Our results show that, while very simple, our model is able to reconstruct realistic extinction profiles with well-calibrated uncertainty, outperforming by an order of magnitude the idealized baseline which is typically used in satellite AOD retrieval algorithms. In particular, the model demonstrates a faithful reconstruction of extinction patterns arising from aerosol water uptake in the boundary layer. Observations however suggest that other extinction patterns, due to aerosol mass concentration, particle size and radiative properties, might be more challenging to capture and require additional vertically resolved predictors.

Selection, Ignorability and Challenges With Causal Fairness

In this paper we look at popular fairness methods that use causal counterfactuals. These methods capture the intuitive notion that a prediction is fair if it coincides with the prediction that would have been made if someone's race, gender or religion were counterfactually different. In order to achieve this, we must have causal models that are able to capture what someone would be like if we were to counterfactually change these traits. However, we argue that any model that can do this must lie outside the particularly well behaved class that is commonly considered in the fairness literature. This is because in fairness settings, models in this class entail a particularly strong causal assumption, normally only seen in a randomised controlled trial. We argue that in general this is unlikely to hold. Furthermore, we show in many cases it can be explicitly rejected due to the fact that samples are selected from a wider population. We show this creates difficulties for counterfactual fairness as well as for the application of more general causal fairness methods.

Giga-scale Kernel Matrix Vector Multiplication on GPU

Kernel matrix vector multiplication (KMVM) is a ubiquitous operation in machine learning and scientific computing, spanning from the kernel literature to signal processing. As kernel matrix vector multiplication tends to scale quadratically in both memory and time, applications are often limited by these computational scaling constraints. We propose a novel approximation procedure coined Faster-Fast and Free Memory Method ($\text{F}^3$M) to address these scaling issues for KMVM. Extensive experiments demonstrate that $\text{F}^3$M has empirical \emph{linear time and memory} complexity with a relative error of order $10^{-3}$ and can compute a full KMVM for a billion points \emph{in under one minute} on a high-end GPU, leading to a significant speed-up in comparison to existing CPU methods. We further demonstrate the utility of our procedure by applying it as a drop-in for the state-of-the-art GPU-based linear solver FALKON, \emph{improving speed 3-5 times} at the cost of $<$1\% drop in accuracy.

Identifying Pauli spin blockade using deep learning

Pauli spin blockade (PSB) can be employed as a great resource for spin qubit initialisation and readout even at elevated temperatures but it can be difficult to identify. We present a machine learning algorithm capable of automatically identifying PSB using charge transport measurements. The scarcity of PSB data is circumvented by training the algorithm with simulated data and by using cross-device validation. We demonstrate our approach on a silicon field-effect transistor device and report an accuracy of 96% on different test devices, giving evidence that the approach is robust to device variability. The approach is expected to be employable across all types of quantum dot devices.

A Kernel Test for Causal Association via Noise Contrastive Backdoor Adjustment

Causal inference grows increasingly complex as the number of confounders increases. Given treatments $X$, confounders $Z$ and outcomes $Y$, we develop a non-parametric method to test the \textit{do-null} hypothesis $H_0:\; p(y|\text{\it do}(X=x))=p(y)$ against the general alternative. Building on the Hilbert Schmidt Independence Criterion (HSIC) for marginal independence testing, we propose backdoor-HSIC (bd-HSIC) and demonstrate that it is calibrated and has power for both binary and continuous treatments under a large number of confounders. Additionally, we establish convergence properties of the estimators of covariance operators used in bd-HSIC. We investigate the advantages and disadvantages of bd-HSIC against parametric tests as well as the importance of using the do-null testing in contrast to marginal independence testing or conditional independence testing. A complete implementation can be found at \hyperlink{https://github.com/MrHuff/kgformula}{\texttt{https://github.com/MrHuff/kgformula}}.