Multi-Task Learning for Extracting Menstrual Characteristics from Clinical Notes

Menstrual health is a critical yet often overlooked aspect of women's healthcare. Despite its clinical relevance, detailed data on menstrual characteristics is rarely available in structured medical records. To address this gap, we propose a novel Natural Language Processing pipeline to extract key menstrual cycle attributes -- dysmenorrhea, regularity, flow volume, and intermenstrual bleeding. Our approach utilizes the GatorTron model with Multi-Task Prompt-based Learning, enhanced by a hybrid retrieval preprocessing step to identify relevant text segments. It out- performs baseline methods, achieving an average F1-score of 90% across all menstrual characteristics, despite being trained on fewer than 100 annotated clinical notes. The retrieval step consistently improves performance across all approaches, allowing the model to focus on the most relevant segments of lengthy clinical notes. These results show that combining multi-task learning with retrieval improves generalization and performance across menstrual charac- teristics, advancing automated extraction from clinical notes and supporting women's health research.

Assessing Uncertainty Estimation Methods for 3D Image Segmentation under Distribution Shifts

In recent years, machine learning has witnessed extensive adoption across various sectors, yet its application in medical image-based disease detection and diagnosis remains challenging due to distribution shifts in real-world data. In practical settings, deployed models encounter samples that differ significantly from the training dataset, especially in the health domain, leading to potential performance issues. This limitation hinders the expressiveness and reliability of deep learning models in health applications. Thus, it becomes crucial to identify methods capable of producing reliable uncertainty estimation in the context of distribution shifts in the health sector. In this paper, we explore the feasibility of using cutting-edge Bayesian and non-Bayesian methods to detect distributionally shifted samples, aiming to achieve reliable and trustworthy diagnostic predictions in segmentation task. Specifically, we compare three distinct uncertainty estimation methods, each designed to capture either unimodal or multimodal aspects in the posterior distribution. Our findings demonstrate that methods capable of addressing multimodal characteristics in the posterior distribution, offer more dependable uncertainty estimates. This research contributes to enhancing the utility of deep learning in healthcare, making diagnostic predictions more robust and trustworthy.