Pathological Primitive Segmentation Based on Visual Foundation Model with Zero-Shot Mask Generation

Medical image processing usually requires a model trained with carefully crafted datasets due to unique image characteristics and domain-specific challenges, especially in pathology. Primitive detection and segmentation in digitized tissue samples are essential for objective and automated diagnosis and prognosis of cancer. SAM (Segment Anything Model) has recently been developed to segment general objects from natural images with high accuracy, but it requires human prompts to generate masks. In this work, we present a novel approach that adapts pre-trained natural image encoders of SAM for detection-based region proposals. Regions proposed by a pre-trained encoder are sent to cascaded feature propagation layers for projection. Then, local semantic and global context is aggregated from multi-scale for bounding box localization and classification. Finally, the SAM decoder uses the identified bounding boxes as essential prompts to generate a comprehensive primitive segmentation map. The entire base framework, SAM, requires no additional training or fine-tuning but could produce an end-to-end result for two fundamental segmentation tasks in pathology. Our method compares with state-of-the-art models in F1 score for nuclei detection and binary/multiclass panoptic(bPQ/mPQ) and mask quality(dice) for segmentation quality on the PanNuke dataset while offering end-to-end efficiency. Our model also achieves remarkable Average Precision (+4.5%) on the secondary dataset (HuBMAP Kidney) compared to Faster RCNN. The code is publicly available at https://github.com/learner-codec/autoprom_sam.

DANet: Enhancing Small Object Detection through an Efficient Deformable Attention Network

Efficient and accurate detection of small objects in manufacturing settings, such as defects and cracks, is crucial for ensuring product quality and safety. To address this issue, we proposed a comprehensive strategy by synergizing Faster R-CNN with cutting-edge methods. By combining Faster R-CNN with Feature Pyramid Network, we enable the model to efficiently handle multi-scale features intrinsic to manufacturing environments. Additionally, Deformable Net is used that contorts and conforms to the geometric variations of defects, bringing precision in detecting even the minuscule and complex features. Then, we incorporated an attention mechanism called Convolutional Block Attention Module in each block of our base ResNet50 network to selectively emphasize informative features and suppress less useful ones. After that we incorporated RoI Align, replacing RoI Pooling for finer region-of-interest alignment and finally the integration of Focal Loss effectively handles class imbalance, crucial for rare defect occurrences. The rigorous evaluation of our model on both the NEU-DET and Pascal VOC datasets underscores its robust performance and generalization capabilities. On the NEU-DET dataset, our model exhibited a profound understanding of steel defects, achieving state-of-the-art accuracy in identifying various defects. Simultaneously, when evaluated on the Pascal VOC dataset, our model showcases its ability to detect objects across a wide spectrum of categories within complex and small scenes.

ViTs are Everywhere: A Comprehensive Study Showcasing Vision Transformers in Different Domain

Transformer design is the de facto standard for natural language processing tasks. The success of the transformer design in natural language processing has lately piqued the interest of researchers in the domain of computer vision. When compared to Convolutional Neural Networks (CNNs), Vision Transformers (ViTs) are becoming more popular and dominant solutions for many vision problems. Transformer-based models outperform other types of networks, such as convolutional and recurrent neural networks, in a range of visual benchmarks. We evaluate various vision transformer models in this work by dividing them into distinct jobs and examining their benefits and drawbacks. ViTs can overcome several possible difficulties with convolutional neural networks (CNNs). The goal of this survey is to show the first use of ViTs in CV. In the first phase, we categorize various CV applications where ViTs are appropriate. Image classification, object identification, image segmentation, video transformer, image denoising, and NAS are all CV applications. Our next step will be to analyze the state-of-the-art in each area and identify the models that are currently available. In addition, we outline numerous open research difficulties as well as prospective research possibilities.