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"cancer detection": models, code, and papers

Beyond Visual Image: Automated Diagnosis of Pigmented Skin Lesions Combining Clinical Image Features with Patient Data

Jan 25, 2022
José G. M. Esgario, Renato A. Krohling

kin cancer is considered one of the most common type of cancer in several countries. Due to the difficulty and subjectivity in the clinical diagnosis of skin lesions, Computer-Aided Diagnosis systems are being developed for assist experts to perform more reliable diagnosis. The clinical analysis and diagnosis of skin lesions relies not only on the visual information but also on the context information provided by the patient. This work addresses the problem of pigmented skin lesions detection from smartphones captured images. In addition to the features extracted from images, patient context information was collected to provide a more accurate diagnosis. The experiments showed that the combination of visual features with context information improved final results. Experimental results are very promising and comparable to experts.

* 33 pages, 11 figures 
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Dense Fully Convolutional Network for Skin Lesion Segmentation

Jun 05, 2018
Ebrahim Nasr-Esfahani, Shima Rafiei, Mohammad H. Jafari, Nader Karimi, James S. Wrobel, S. M. Reza Soroushmehr, Shadrokh Samavi, Kayvan Najarian

Lesion segmentation in skin images is an important step in computerized detection of skin cancer. Melanoma is known as one of the most life threatening types of this cancer. Existing methods often fall short of accurately segmenting lesions with fuzzy boarders. In this paper, a new class of fully convolutional network is proposed, with new dense pooling layers for segmentation of lesion regions in non-dermoscopic images. Unlike other existing convolutional networks, this proposed network is designed to produce dense feature maps. This network leads to highly accurate segmentation of lesions. The produced dice score here is 91.6% which outperforms state-of-the-art algorithms in segmentation of skin lesions based on the Dermquest dataset.

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Attention U-Net Based Adversarial Architectures for Chest X-ray Lung Segmentation

Mar 23, 2020
Gusztáv Gaál, Balázs Maga, András Lukács

Chest X-ray is the most common test among medical imaging modalities. It is applied for detection and differentiation of, among others, lung cancer, tuberculosis, and pneumonia, the last with importance due to the COVID-19 disease. Integrating computer-aided detection methods into the radiologist diagnostic pipeline, greatly reduces the doctors' workload, increasing reliability and quantitative analysis. Here we present a novel deep learning approach for lung segmentation, a basic, but arduous task in the diagnostic pipeline. Our method uses state-of-the-art fully convolutional neural networks in conjunction with an adversarial critic model. It generalized well to CXR images of unseen datasets with different patient profiles, achieving a final DSC of 97.5% on the JSRT dataset.

* 7 pages, 4 figures 
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Salient Skin Lesion Segmentation via Dilated Scale-Wise Feature Fusion Network

May 20, 2022
Pourya Shamsolmoali, Masoumeh Zareapoor, Eric Granger, Huiyu Zhou

Skin lesion detection in dermoscopic images is essential in the accurate and early diagnosis of skin cancer by a computerized apparatus. Current skin lesion segmentation approaches show poor performance in challenging circumstances such as indistinct lesion boundaries, low contrast between the lesion and the surrounding area, or heterogeneous background that causes over/under segmentation of the skin lesion. To accurately recognize the lesion from the neighboring regions, we propose a dilated scale-wise feature fusion network based on convolution factorization. Our network is designed to simultaneously extract features at different scales which are systematically fused for better detection. The proposed model has satisfactory accuracy and efficiency. Various experiments for lesion segmentation are performed along with comparisons with the state-of-the-art models. Our proposed model consistently showcases state-of-the-art results.

* International Conference of Pattern Recognition (ICPR) 2022 
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A Hybrid Deep Learning Architecture for Leukemic B-lymphoblast Classification

Sep 26, 2019
Sara Hosseinzadeh Kassani, Peyman Hosseinzadeh kassani, Michal J. Wesolowski, Kevin A. Schneider, Ralph Deters

Automatic detection of leukemic B-lymphoblast cancer in microscopic images is very challenging due to the complicated nature of histopathological structures. To tackle this issue, an automatic and robust diagnostic system is required for early detection and treatment. In this paper, an automated deep learning-based method is proposed to distinguish between immature leukemic blasts and normal cells. The proposed deep learning based hybrid method, which is enriched by different data augmentation techniques, is able to extract high-level features from input images. Results demonstrate that the proposed model yields better prediction than individual models for Leukemic B-lymphoblast classification with 96.17% overall accuracy, 95.17% sensitivity and 98.58% specificity. Fusing the features extracted from intermediate layers, our approach has the potential to improve the overall classification performance.

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Automated Unsupervised Segmentation of Liver Lesions in CT scans via Cahn-Hilliard Phase Separation

Apr 07, 2017
Jana Lipková, Markus Rempfler, Patrick Christ, John Lowengrub, Bjoern H. Menze

The segmentation of liver lesions is crucial for detection, diagnosis and monitoring progression of liver cancer. However, design of accurate automated methods remains challenging due to high noise in CT scans, low contrast between liver and lesions, as well as large lesion variability. We propose a 3D automatic, unsupervised method for liver lesions segmentation using a phase separation approach. It is assumed that liver is a mixture of two phases: healthy liver and lesions, represented by different image intensities polluted by noise. The Cahn-Hilliard equation is used to remove the noise and separate the mixture into two distinct phases with well-defined interfaces. This simplifies the lesion detection and segmentation task drastically and enables to segment liver lesions by thresholding the Cahn-Hilliard solution. The method was tested on 3Dircadb and LITS dataset.

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Deep Multi-instance Networks with Sparse Label Assignment for Whole Mammogram Classification

Dec 18, 2016
Wentao Zhu, Qi Lou, Yeeleng Scott Vang, Xiaohui Xie

Mammogram classification is directly related to computer-aided diagnosis of breast cancer. Traditional methods requires great effort to annotate the training data by costly manual labeling and specialized computational models to detect these annotations during test. Inspired by the success of using deep convolutional features for natural image analysis and multi-instance learning for labeling a set of instances/patches, we propose end-to-end trained deep multi-instance networks for mass classification based on whole mammogram without the aforementioned costly need to annotate the training data. We explore three different schemes to construct deep multi-instance networks for whole mammogram classification. Experimental results on the INbreast dataset demonstrate the robustness of proposed deep networks compared to previous work using segmentation and detection annotations in the training.

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Lung nodule segmentation via level set machine learning

Oct 08, 2019
Matthew C Hancock, Jerry F Magnan

Lung cancer has the highest mortality rate of all cancers in both men and women. The algorithmic detection, characterization, and diagnosis of abnormalities found in chest CT scan images can potentially aid radiologists by providing additional medical information to consider in their assessment. Lung nodule segmentation, i.e., the algorithmic delineation of the lung nodule surface, is a fundamental component of an automated nodule analysis pipeline. We introduce an extension of the vanilla level set image segmentation method where the velocity function is learned from data via machine learning regression methods, rather than manually designed. This mitigates the tedious design process of the velocity term from the standard method. We apply the method to image volumes of lung nodules from CT scans in the publicly available LIDC dataset, obtaining an average intersection over union score of 0.7185($\pm$0.1114).

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Low-rank Convex/Sparse Thermal Matrix Approximation for Infrared-based Diagnostic System

Oct 14, 2020
Bardia Yousefi, Clemente Ibarra Castanedo, Xavier P. V. Maldague

Active and passive thermography are two efficient techniques extensively used to measure heterogeneous thermal patterns leading to subsurface defects for diagnostic evaluations. This study conducts a comparative analysis on low-rank matrix approximation methods in thermography with applications of semi-, convex-, and sparse- non-negative matrix factorization (NMF) methods for detecting subsurface thermal patterns. These methods inherit the advantages of principal component thermography (PCT) and sparse PCT, whereas tackle negative bases in sparse PCT with non-negative constraints, and exhibit clustering property in processing data. The practicality and efficiency of these methods are demonstrated by the experimental results for subsurface defect detection in three specimens (for different depth and size defects) and preserving thermal heterogeneity for distinguishing breast abnormality in breast cancer screening dataset (accuracy of 74.1%, 75.8%, and 77.8%).

* IEEE Transactions on Instrumentation and Measurement 2020 
* Authors version 
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Selection Mammogram Texture Descriptors Based on Statistics Properties Backpropagation Structure

Jul 10, 2013
Shofwatul 'Uyun, Sri Hartati, Agus Harjoko, Subanar

Computer Aided Diagnosis (CAD) system has been developed for the early detection of breast cancer, one of the most deadly cancer for women. The benign of mammogram has different texture from malignant. There are fifty mammogram images used in this work which are divided for training and testing. Therefore, the selection of the right texture to determine the level of accuracy of CAD system is important. The first and second order statistics are the texture feature extraction methods which can be used on a mammogram. This work classifies texture descriptor into nine groups where the extraction of features is classified using backpropagation learning with two types of multi-layer perceptron (MLP). The best texture descriptor as selected when the value of regression 1 appears in both the MLP-1 and the MLP-2 with the number of epoches less than 1000. The results of testing show that the best selected texture descriptor is the second order (combination) using all direction (0, 45, 90 and 135) that have twenty four descriptors.

* 5 pages, International Journal of Computer Science and Information Security (IJCSIS) Vol. 11, No. 5, May 2013 Article ID 26041306, arXiv admin note: substantial text overlap with arXiv:1306.5960; arXiv:1306.6489 
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