Deep learning segmentation of fibrous cap in intravascular optical coherence tomography images

Thin-cap fibroatheroma (TCFA) is a prominent risk factor for plaque rupture. Intravascular optical coherence tomography (IVOCT) enables identification of fibrous cap (FC), measurement of FC thicknesses, and assessment of plaque vulnerability. We developed a fully-automated deep learning method for FC segmentation. This study included 32,531 images across 227 pullbacks from two registries. Images were semi-automatically labeled using our OCTOPUS with expert editing using established guidelines. We employed preprocessing including guidewire shadow detection, lumen segmentation, pixel-shifting, and Gaussian filtering on raw IVOCT (r,theta) images. Data were augmented in a natural way by changing theta in spiral acquisitions and by changing intensity and noise values. We used a modified SegResNet and comparison networks to segment FCs. We employed transfer learning from our existing much larger, fully-labeled calcification IVOCT dataset to reduce deep-learning training. Overall, our method consistently delivered better FC segmentation results (Dice: 0.837+/-0.012) than other deep-learning methods. Transfer learning reduced training time by 84% and reduced the need for more training samples. Our method showed a high level of generalizability, evidenced by highly-consistent segmentations across five-fold cross-validation (sensitivity: 85.0+/-0.3%, Dice: 0.846+/-0.011) and the held-out test (sensitivity: 84.9%, Dice: 0.816) sets. In addition, we found excellent agreement of FC thickness with ground truth (2.95+/-20.73 um), giving clinically insignificant bias. There was excellent reproducibility in pre- and post-stenting pullbacks (average FC angle: 200.9+/-128.0 deg / 202.0+/-121.1 deg). Our method will be useful for multiple research purposes and potentially for planning stent deployments that avoid placing a stent edge over an FC.

Latent Representation and Simulation of Markov Processes via Time-Lagged Information Bottleneck

Markov processes are widely used mathematical models for describing dynamic systems in various fields. However, accurately simulating large-scale systems at long time scales is computationally expensive due to the short time steps required for accurate integration. In this paper, we introduce an inference process that maps complex systems into a simplified representational space and models large jumps in time. To achieve this, we propose Time-lagged Information Bottleneck (T-IB), a principled objective rooted in information theory, which aims to capture relevant temporal features while discarding high-frequency information to simplify the simulation task and minimize the inference error. Our experiments demonstrate that T-IB learns information-optimal representations for accurately modeling the statistical properties and dynamics of the original process at a selected time lag, outperforming existing time-lagged dimensionality reduction methods.

Prompt Cache: Modular Attention Reuse for Low-Latency Inference

We present Prompt Cache, an approach for accelerating inference for large language models (LLM) by reusing attention states across different LLM prompts. Many input prompts have overlapping text segments, such as system messages, prompt templates, and documents provided for context. Our key insight is that by precomputing and storing the attention states of these frequently occurring text segments on the inference server, we can efficiently reuse them when these segments appear in user prompts. Prompt Cache employs a schema to explicitly define such reusable text segments, called prompt modules. The schema ensures positional accuracy during attention state reuse and provides users with an interface to access cached states in their prompt. Using a prototype implementation, we evaluate Prompt Cache across several LLMs. We show that Prompt Cache significantly reduce latency in time-to-first-token, especially for longer prompts such as document-based question answering and recommendations. The improvements range from 8x for GPU-based inference to 60x for CPU-based inference, all while maintaining output accuracy and without the need for model parameter modifications.

Temporal Graph Representation Learning with Adaptive Augmentation Contrastive

Temporal graph representation learning aims to generate low-dimensional dynamic node embeddings to capture temporal information as well as structural and property information. Current representation learning methods for temporal networks often focus on capturing fine-grained information, which may lead to the model capturing random noise instead of essential semantic information. While graph contrastive learning has shown promise in dealing with noise, it only applies to static graphs or snapshots and may not be suitable for handling time-dependent noise. To alleviate the above challenge, we propose a novel Temporal Graph representation learning with Adaptive augmentation Contrastive (TGAC) model. The adaptive augmentation on the temporal graph is made by combining prior knowledge with temporal information, and the contrastive objective function is constructed by defining the augmented inter-view contrast and intra-view contrast. To complement TGAC, we propose three adaptive augmentation strategies that modify topological features to reduce noise from the network. Our extensive experiments on various real networks demonstrate that the proposed model outperforms other temporal graph representation learning methods.

Enhancing LLM Intelligence with ARM-RAG: Auxiliary Rationale Memory for Retrieval Augmented Generation

Large Language Models (LLMs) are smart but forgetful. Recent studies, (e.g., (Bubeck et al., 2023)) on modern LLMs have shown that they are capable of performing amazing tasks typically necessitating human-level intelligence. However, unlike humans, frozen LLMs do not improve over time; they neither acquire new knowledge nor learn from their successes or failures. Some approaches to improving the intelligence of LLMs include fine-tuning models based on problem-solving performance (Zelikman et al., 2022), and building bigger and more sophisticated models (Bubeck et al., 2023). However, these methods have the drawback of requiring substantial data and computational resources to retrain existing models. In this paper, we explore the use of Retrieval Augmented Generation, also known as RAG (Lewis et al., 2021) to improve problem-solving performance. We propose ARM-RAG (Auxiliary Rationale Memory for Retrieval Augmented Generation), a system that learns from its successes without incurring high training costs. We demonstrate that the storage and subsequent retrieval of reasoning chains have a positive influence on performance in grade-school math problems.

Coverage Hole Elimination System in Industrial Environment

The paper proposes a framework to identify and avoid the coverage hole in an indoor industry environment. We assume an edge cloud co-located controller that followers the Automated Guided Vehicle (AGV) movement on a factory floor over a wireless channel. The coverage holes are caused due to blockage, path-loss, and fading effects. An AGV in the coverage hole may lose connectivity to the edge-cloud and become unstable. To avoid connectivity loss, we proposed a framework that identifies the position of coverage hole using a Support- Vector Machine (SVM) classifier model and constructs a binary coverage hole map incorporating the AGV trajectory re-planning to avoid the identified coverage hole. The AGV's re-planned trajectory is optimized and selected to avoid coverage hole the shortest coverage-hole-free trajectory. We further investigated the look-ahead time's impact on the AGV's re-planned trajectory performance. The results reveal that an AGV's re-planned trajectory can be shorter and further optimized if the coverage hole position is known ahead of time

Integrated Sensing, Communication, and Computing for Cost-effective Multimodal Federated Perception

Federated learning (FL) is a classic paradigm of 6G edge intelligence (EI), which alleviates privacy leaks and high communication pressure caused by traditional centralized data processing in the artificial intelligence of things (AIoT). The implementation of multimodal federated perception (MFP) services involves three sub-processes, including sensing-based multimodal data generation, communication-based model transmission, and computing-based model training, ultimately relying on available underlying multi-domain physical resources such as time, frequency, and computing power. How to reasonably coordinate the multi-domain resources scheduling among sensing, communication, and computing, therefore, is crucial to the MFP networks. To address the above issues, this paper investigates service-oriented resource management with integrated sensing, communication, and computing (ISCC). With the incentive mechanism of the MFP service market, the resources management problem is redefined as a social welfare maximization problem, where the idea of "expanding resources" and "reducing costs" is used to improve learning performance gain and reduce resource costs. Experimental results demonstrate the effectiveness and robustness of the proposed resource scheduling mechanisms.

Leveraging Transformers to Improve Breast Cancer Classification and Risk Assessment with Multi-modal and Longitudinal Data

Breast cancer screening, primarily conducted through mammography, is often supplemented with ultrasound for women with dense breast tissue. However, existing deep learning models analyze each modality independently, missing opportunities to integrate information across imaging modalities and time. In this study, we present Multi-modal Transformer (MMT), a neural network that utilizes mammography and ultrasound synergistically, to identify patients who currently have cancer and estimate the risk of future cancer for patients who are currently cancer-free. MMT aggregates multi-modal data through self-attention and tracks temporal tissue changes by comparing current exams to prior imaging. Trained on 1.3 million exams, MMT achieves an AUROC of 0.943 in detecting existing cancers, surpassing strong uni-modal baselines. For 5-year risk prediction, MMT attains an AUROC of 0.826, outperforming prior mammography-based risk models. Our research highlights the value of multi-modal and longitudinal imaging in cancer diagnosis and risk stratification.

ViDa: Visualizing DNA hybridization trajectories with biophysics-informed deep graph embeddings

Visualization tools can help synthetic biologists and molecular programmers understand the complex reactive pathways of nucleic acid reactions, which can be designed for many potential applications and can be modelled using a continuous-time Markov chain (CTMC). Here we present ViDa, a new visualization approach for DNA reaction trajectories that uses a 2D embedding of the secondary structure state space underlying the CTMC model. To this end, we integrate a scattering transform of the secondary structure adjacency, a variational autoencoder, and a nonlinear dimensionality reduction method. We augment the training loss with domain-specific supervised terms that capture both thermodynamic and kinetic features. We assess ViDa on two well-studied DNA hybridization reactions. Our results demonstrate that the domain-specific features lead to significant quality improvements over the state-of-the-art in DNA state space visualization, successfully separating different folding pathways and thus providing useful insights into dominant reaction mechanisms.

OVIR-3D: Open-Vocabulary 3D Instance Retrieval Without Training on 3D Data

This work presents OVIR-3D, a straightforward yet effective method for open-vocabulary 3D object instance retrieval without using any 3D data for training. Given a language query, the proposed method is able to return a ranked set of 3D object instance segments based on the feature similarity of the instance and the text query. This is achieved by a multi-view fusion of text-aligned 2D region proposals into 3D space, where the 2D region proposal network could leverage 2D datasets, which are more accessible and typically larger than 3D datasets. The proposed fusion process is efficient as it can be performed in real-time for most indoor 3D scenes and does not require additional training in 3D space. Experiments on public datasets and a real robot show the effectiveness of the method and its potential for applications in robot navigation and manipulation.