Segment anything model (SAM) for brain extraction in fMRI studies

Brain extraction and removal of skull artifacts from magnetic resonance images (MRI) is an important preprocessing step in neuroimaging analysis. There are many tools developed to handle human fMRI images, which could involve manual steps for verifying results from brain segmentation that makes it time consuming and inefficient. In this study, we will use the segment anything model (SAM), a freely available neural network released by Meta[4], which has shown promising results in many generic segmentation applications. We will analyze the efficiency of SAM for neuroimaging brain segmentation by removing skull artifacts. The results of the experiments showed promising results that explore using automated segmentation algorithms for neuroimaging without the need to train on custom medical imaging dataset.

Metacognition is all you need? Using Introspection in Generative Agents to Improve Goal-directed Behavior

Recent advances in Large Language Models (LLMs) have shown impressive capabilities in various applications, yet LLMs face challenges such as limited context windows and difficulties in generalization. In this paper, we introduce a metacognition module for generative agents, enabling them to observe their own thought processes and actions. This metacognitive approach, designed to emulate System 1 and System 2 cognitive processes, allows agents to significantly enhance their performance by modifying their strategy. We tested the metacognition module on a variety of scenarios, including a situation where generative agents must survive a zombie apocalypse, and observe that our system outperform others, while agents adapt and improve their strategies to complete tasks over time.

IRS Configuration Techniques for Ultra Wideband Signals and THz Communications

Motivated by the challenges of future 6G communications where terahertz (THz) frequencies, intelligent reflective surfaces (IRSs) and ultra-wideband (UWB) signals coexist, we analyse and propose a set of efficient techniques for configuring the IRS when the signal bandwidth is a significant fraction of the central frequency (up to 50%). To the best of our knowledge this is the first time that IRS configuration techniques are analyzed for such huge bandwidths. In our work we take into account for the channel model, the power spectral density of the signal reflected by the IRS and the network geometry. We evaluate the proposed solutions in terms of achievable rate and compare it against an upper bound we derived. Our results hint rules for designing IRS-aided communication systems and allow to draw conclusions on the trade-off between performance and complexity required for configuring the IRS.

Real-Time and Security-Aware Precoding in RIS-Empowered Multi-User Wireless Networks

In this letter, we propose a deep-unfolding-based framework (DUNet) to maximize the secrecy rate in reconfigurable intelligent surface (RIS) empowered multi-user wireless networks. To tailor DUNet, first we relax the problem, decouple it into beamforming and phase shift subproblems, and propose an alternative optimization (AO) based solution for the relaxed problem. Second, we apply Karush-Kuhn-Tucker (KKT) conditions to obtain a closed-form solutions for the beamforming and the phase shift. Using deep-unfolding mechanism, we transform the closed-form solutions into a deep learning model (i.e., DUNet) that achieves a comparable performance to that of AO in terms of accuracy and about 25.6 times faster.

Weathering Ongoing Uncertainty: Learning and Planning in a Time-Varying Partially Observable Environment

Optimal decision-making presents a significant challenge for autonomous systems operating in uncertain, stochastic and time-varying environments. Environmental variability over time can significantly impact the system's optimal decision making strategy for mission completion. To model such environments, our work combines the previous notion of Time-Varying Markov Decision Processes (TVMDP) with partial observability and introduces Time-Varying Partially Observable Markov Decision Processes (TV-POMDP). We propose a two-pronged approach to accurately estimate and plan within the TV-POMDP: 1) Memory Prioritized State Estimation (MPSE), which leverages weighted memory to provide more accurate time-varying transition estimates; and 2) an MPSE-integrated planning strategy that optimizes long-term rewards while accounting for temporal constraint. We validate the proposed framework and algorithms using simulations and hardware, with robots exploring a partially observable, time-varying environments. Our results demonstrate superior performance over standard methods, highlighting the framework's effectiveness in stochastic, uncertain, time-varying domains.

Wavelet-Inspired Multiscale Graph Convolutional Recurrent Network for Traffic Forecasting

Traffic forecasting is the foundation for intelligent transportation systems. Spatiotemporal graph neural networks have demonstrated state-of-the-art performance in traffic forecasting. However, these methods do not explicitly model some of the natural characteristics in traffic data, such as the multiscale structure that encompasses spatial and temporal variations at different levels of granularity or scale. To that end, we propose a Wavelet-Inspired Graph Convolutional Recurrent Network (WavGCRN) which combines multiscale analysis (MSA)-based method with Deep Learning (DL)-based method. In WavGCRN, the traffic data is decomposed into time-frequency components with Discrete Wavelet Transformation (DWT), constructing a multi-stream input structure; then Graph Convolutional Recurrent networks (GCRNs) are employed as encoders for each stream, extracting spatiotemporal features in different scales; and finally the learnable Inversed DWT and GCRN are combined as the decoder, fusing the information from all streams for traffic metrics reconstruction and prediction. Furthermore, road-network-informed graphs and data-driven graph learning are combined to accurately capture spatial correlation. The proposed method can offer well-defined interpretability, powerful learning capability, and competitive forecasting performance on real-world traffic data sets.

Attention to detail: inter-resolution knowledge distillation

The development of computer vision solutions for gigapixel images in digital pathology is hampered by significant computational limitations due to the large size of whole slide images. In particular, digitizing biopsies at high resolutions is a time-consuming process, which is necessary due to the worsening results from the decrease in image detail. To alleviate this issue, recent literature has proposed using knowledge distillation to enhance the model performance at reduced image resolutions. In particular, soft labels and features extracted at the highest magnification level are distilled into a model that takes lower-magnification images as input. However, this approach fails to transfer knowledge about the most discriminative image regions in the classification process, which may be lost when the resolution is decreased. In this work, we propose to distill this information by incorporating attention maps during training. In particular, our formulation leverages saliency maps of the target class via grad-CAMs, which guides the lower-resolution Student model to match the Teacher distribution by minimizing the l2 distance between them. Comprehensive experiments on prostate histology image grading demonstrate that the proposed approach substantially improves the model performance across different image resolutions compared to previous literature.

SH2: Self-Highlighted Hesitation Helps You Decode More Truthfully

Large language models (LLMs) demonstrate great performance in text generation. However, LLMs are still suffering from hallucinations. In this work, we propose an inference-time method, Self-Highlighted Hesitation (SH2), to help LLMs decode more truthfully. SH2 is based on a simple fact rooted in information theory that for an LLM, the tokens predicted with lower probabilities are prone to be more informative than others. Our analysis shows that the tokens assigned with lower probabilities by an LLM are more likely to be closely related to factual information, such as nouns, proper nouns, and adjectives. Therefore, we propose to ''highlight'' the factual information by selecting the tokens with the lowest probabilities and concatenating them to the original context, thus forcing the model to repeatedly read and hesitate on these tokens before generation. During decoding, we also adopt contrastive decoding to emphasize the difference in the output probabilities brought by the hesitation. Experimental results demonstrate that our SH2, requiring no additional data or models, can effectively help LLMs elicit factual knowledge and distinguish hallucinated contexts. Significant and consistent improvements are achieved by SH2 for LLaMA-7b and LLaMA2-7b on multiple hallucination tasks.

DiffDA: a diffusion model for weather-scale data assimilation

The generation of initial conditions via accurate data assimilation is crucial for reliable weather forecasting and climate modeling. We propose the DiffDA as a machine learning based data assimilation method capable of assimilating atmospheric variables using predicted states and sparse observations. We adapt the pretrained GraphCast weather forecast model as a denoising diffusion model. Our method applies two-phase conditioning: on the predicted state during both training and inference, and on sparse observations during inference only. As a byproduct, this strategy also enables the post-processing of predictions into the future, for which no observations are available.Through experiments based on a reanalysis dataset, we have verified that our method can produce assimilated global atmospheric data consistent with observations at 0.25degree resolution. The experiments also show that the initial conditions that are generated via our approach can be used for forecast models with a loss of lead time of at most 24 hours when compared to initial conditions of state-of-the-art data assimilation suites. This enables to apply the method to real world applications such as the creation of reanalysis datasets with autoregressive data assimilation.

Cheetah: Bridging the Gap Between Machine Learning and Particle Accelerator Physics with High-Speed, Differentiable Simulations

Machine learning has emerged as a powerful solution to the modern challenges in accelerator physics. However, the limited availability of beam time, the computational cost of simulations, and the high-dimensionality of optimisation problems pose significant challenges in generating the required data for training state-of-the-art machine learning models. In this work, we introduce Cheetah, a PyTorch-based high-speed differentiable linear-beam dynamics code. Cheetah enables the fast collection of large data sets by reducing computation times by multiple orders of magnitude and facilitates efficient gradient-based optimisation for accelerator tuning and system identification. This positions Cheetah as a user-friendly, readily extensible tool that integrates seamlessly with widely adopted machine learning tools. We showcase the utility of Cheetah through five examples, including reinforcement learning training, gradient-based beamline tuning, gradient-based system identification, physics-informed Bayesian optimisation priors, and modular neural network surrogate modelling of space charge effects. The use of such a high-speed differentiable simulation code will simplify the development of machine learning-based methods for particle accelerators and fast-track their integration into everyday operations of accelerator facilities.