With the proliferation of research means and computational methodologies, published biomedical literature is growing exponentially in numbers and volume. As a consequence, in the fields of biological, medical and clinical research, domain experts have to sift through massive amounts of scientific text to find relevant information. However, this process is extremely tedious and slow to be performed by humans. Hence, novel computational information extraction and correlation mechanisms are required to boost meaningful knowledge extraction. In this work, we present the design, implementation and application of a novel data extraction and exploration system. This system extracts deep semantic relations between textual entities from scientific literature to enrich existing structured clinical data in the domain of cancer cell lines. We introduce a new public data exploration portal, which enables automatic linking of genomic copy number variants plots with ranked, related entities such as affected genes. Each relation is accompanied by literature-derived evidences, allowing for deep, yet rapid, literature search, using existing structured data as a springboard. Our system is publicly available on the web at https://cancercelllines.org
Social media has drastically reshaped the world that allows billions of people to engage in such interactive environments to conveniently create and share content with the public. Among them, text data (e.g., tweets, blogs) maintains the basic yet important social activities and generates a rich source of user-oriented information. While those explicit sensitive user data like credentials has been significantly protected by all means, personal private attribute (e.g., age, gender, location) disclosure due to inference attacks is somehow challenging to avoid, especially when powerful natural language processing (NLP) techniques have been effectively deployed to automate attribute inferences from implicit text data. This puts users' attribute privacy at risk. To address this challenge, in this paper, we leverage the inherent vulnerability of machine learning to adversarial attacks, and design a novel text-space Adversarial attack for Social Good, called Adv4SG. In other words, we cast the problem of protecting personal attribute privacy as an adversarial attack formulation problem over the social media text data to defend against NLP-based attribute inference attacks. More specifically, Adv4SG proceeds with a sequence of word perturbations under given constraints such that the probed attribute cannot be identified correctly. Different from the prior works, we advance Adv4SG by considering social media property, and introducing cost-effective mechanisms to expedite attribute obfuscation over text data under the black-box setting. Extensive experiments on real-world social media datasets have demonstrated that our method can effectively degrade the inference accuracy with less computational cost over different attribute settings, which substantially helps mitigate the impacts of inference attacks and thus achieve high performance in user attribute privacy protection.
Automatic Speech Recognition (ASR) is a technology that converts spoken words into text, facilitating interaction between humans and machines. One of the most common applications of ASR is Speech-To-Text (STT) technology, which simplifies user workflows by transcribing spoken words into text. In the medical field, STT has the potential to significantly reduce the workload of clinicians who rely on typists to transcribe their voice recordings. However, developing an STT model for the medical domain is challenging due to the lack of sufficient speech and text datasets. To address this issue, we propose a medical-domain text correction method that modifies the output text of a general STT system using the Vision Language Pre-training (VLP) method. VLP combines textual and visual information to correct text based on image knowledge. Our extensive experiments demonstrate that the proposed method offers quantitatively and clinically significant improvements in STT performance in the medical field. We further show that multi-modal understanding of image and text information outperforms single-modal understanding using only text information.
The prevalence of large-scale multimodal datasets presents unique challenges in assessing dataset quality. We propose a two-step method to analyze multimodal datasets, which leverages a small seed of human annotation to map each multimodal instance to the modalities required to process it. Our method sheds light on the importance of different modalities in datasets, as well as the relationship between them. We apply our approach to TVQA, a video question-answering dataset, and discover that most questions can be answered using a single modality, without a substantial bias towards any specific modality. Moreover, we find that more than 70% of the questions are solvable using several different single-modality strategies, e.g., by either looking at the video or listening to the audio, highlighting the limited integration of multiple modalities in TVQA. We leverage our annotation and analyze the MERLOT Reserve, finding that it struggles with image-based questions compared to text and audio, but also with auditory speaker identification. Based on our observations, we introduce a new test set that necessitates multiple modalities, observing a dramatic drop in model performance. Our methodology provides valuable insights into multimodal datasets and highlights the need for the development of more robust models.
Every Scene Text Recognition (STR) task consists of text localization \& text recognition as the prominent sub-tasks. However, in real-world applications with fixed camera positions such as equipment monitor reading, image-based data entry, and printed document data extraction, the underlying data tends to be regular scene text. Hence, in these tasks, the use of generic, bulky models comes up with significant disadvantages compared to customized, efficient models in terms of model deployability, data privacy \& model reliability. Therefore, this paper introduces the underlying concepts, theory, implementation, and experiment results to develop models, which are highly specialized for the task itself, to achieve not only the SOTA performance but also to have minimal model weights, shorter inference time, and high model reliability. We introduce a novel deep learning architecture (GeoTRNet), trained to identify digits in a regular scene image, only using the geometrical features present, mimicking human perception over text recognition. The code is publicly available at https://github.com/ACRA-FL/GeoTRNet
We present a novel vision-language prompt learning approach for few-shot out-of-distribution (OOD) detection. Few-shot OOD detection aims to detect OOD images from classes that are unseen during training using only a few labeled in-distribution (ID) images. While prompt learning methods such as CoOp have shown effectiveness and efficiency in few-shot ID classification, they still face limitations in OOD detection due to the potential presence of ID-irrelevant information in text embeddings. To address this issue, we introduce a new approach called Local regularized Context Optimization (LoCoOp), which performs OOD regularization that utilizes the portions of CLIP local features as OOD features during training. CLIP's local features have a lot of ID-irrelevant nuisances (e.g., backgrounds), and by learning to push them away from the ID class text embeddings, we can remove the nuisances in the ID class text embeddings and enhance the separation between ID and OOD. Experiments on the large-scale ImageNet OOD detection benchmarks demonstrate the superiority of our LoCoOp over zero-shot, fully supervised detection methods and prompt learning methods. Notably, even in a one-shot setting -- just one label per class, LoCoOp outperforms existing zero-shot and fully supervised detection methods. The code will be available via https://github.com/AtsuMiyai/LoCoOp.
Contrastive learning has shown promising potential for learning robust representations by utilizing unlabeled data. However, constructing effective positive-negative pairs for contrastive learning on facial behavior datasets remains challenging. This is because such pairs inevitably encode the subject-ID information, and the randomly constructed pairs may push similar facial images away due to the limited number of subjects in facial behavior datasets. To address this issue, we propose to utilize activity descriptions, coarse-grained information provided in some datasets, which can provide high-level semantic information about the image sequences but is often neglected in previous studies. More specifically, we introduce a two-stage Contrastive Learning with Text-Embeded framework for Facial behavior understanding (CLEF). The first stage is a weakly-supervised contrastive learning method that learns representations from positive-negative pairs constructed using coarse-grained activity information. The second stage aims to train the recognition of facial expressions or facial action units by maximizing the similarity between image and the corresponding text label names. The proposed CLEF achieves state-of-the-art performance on three in-the-lab datasets for AU recognition and three in-the-wild datasets for facial expression recognition.
Hate speech detection is a challenging natural language processing task that requires capturing linguistic and contextual nuances. Pre-trained language models (PLMs) offer rich semantic representations of text that can improve this task. However there is still limited knowledge about ways to effectively combine representations across PLMs and leverage their complementary strengths. In this work, we shed light on various combination techniques for several PLMs and comprehensively analyze their effectiveness. Our findings show that combining embeddings leads to slight improvements but at a high computational cost and the choice of combination has marginal effect on the final outcome. We also make our codebase public at https://github.com/aflah02/The-Art-of-Embedding-Fusion-Optimizing-Hate-Speech-Detection .
Large-scale vision language (VL) models use Transformers to perform cross-modal interactions between the input text and image. These cross-modal interactions are computationally expensive and memory-intensive due to the quadratic complexity of processing the input image and text. We present PuMer: a token reduction framework that uses text-informed Pruning and modality-aware Merging strategies to progressively reduce the tokens of input image and text, improving model inference speed and reducing memory footprint. PuMer learns to keep salient image tokens related to the input text and merges similar textual and visual tokens by adding lightweight token reducer modules at several cross-modal layers in the VL model. Training PuMer is mostly the same as finetuning the original VL model but faster. Our evaluation for two vision language models on four downstream VL tasks shows PuMer increases inference throughput by up to 2x and reduces memory footprint by over 50% while incurring less than a 1% accuracy drop.
Lip-to-speech involves generating a natural-sounding speech synchronized with a soundless video of a person talking. Despite recent advances, current methods still cannot produce high-quality speech with high levels of intelligibility for challenging and realistic datasets such as LRS3. In this work, we present LipVoicer, a novel method that generates high-quality speech, even for in-the-wild and rich datasets, by incorporating the text modality. Given a silent video, we first predict the spoken text using a pre-trained lip-reading network. We then condition a diffusion model on the video and use the extracted text through a classifier-guidance mechanism where a pre-trained ASR serves as the classifier. LipVoicer outperforms multiple lip-to-speech baselines on LRS2 and LRS3, which are in-the-wild datasets with hundreds of unique speakers in their test set and an unrestricted vocabulary. Moreover, our experiments show that the inclusion of the text modality plays a major role in the intelligibility of the produced speech, readily perceptible while listening, and is empirically reflected in the substantial reduction of the WER metric. We demonstrate the effectiveness of LipVoicer through human evaluation, which shows that it produces more natural and synchronized speech signals compared to competing methods. Finally, we created a demo showcasing LipVoicer's superiority in producing natural, synchronized, and intelligible speech, providing additional evidence of its effectiveness. Project page: https://lipvoicer.github.io