The fast-growing number of research articles makes it problematic for scholars to keep track of the new findings related to their areas of expertise. Furthermore, linking knowledge across disciplines in rapidly developing fields becomes challenging for complex topics like climate change that demand interdisciplinary solutions. At the same time, the rise of Black Box types of text summarization makes it difficult to understand how text relationships are built, let alone relate to existing theories conceptualizing cause-effect relationships and permitting hypothesizing. This work aims to sensibly use Natural Language Processing by extracting variables relations and synthesizing their findings using networks while relating to key concepts dominant in relevant disciplines. As an example, we apply our methodology to the analysis of farmers' adaptation to climate change. For this, we perform a Natural Language Processing analysis of publications returned by Scopus in August 2022. Results show that the use of Natural Language Processing together with networks in a descriptive manner offers a fast and interpretable way to synthesize literature review findings as long as researchers back up results with theory.
Multimodal Named Entity Recognition (MNER) is a crucial task for information extraction from social media platforms such as Twitter. Most current methods rely on attention weights to extract information from both text and images but are often unreliable and lack interpretability. To address this problem, we propose incorporating uncertainty estimation into the MNER task, producing trustworthy predictions. Our proposed algorithm models the distribution of each modality as a Normal-inverse Gamma distribution, and fuses them into a unified distribution with an evidential fusion mechanism, enabling hierarchical characterization of uncertainties and promotion of prediction accuracy and trustworthiness. Additionally, we explore the potential of pre-trained large foundation models in MNER and propose an efficient fusion approach that leverages their robust feature representations. Experiments on two datasets demonstrate that our proposed method outperforms the baselines and achieves new state-of-the-art performance.
In this paper, we design novel interactive deep learning methods to improve semantic interactions in visual analytics applications. The ability of semantic interaction to infer analysts' precise intents during sensemaking is dependent on the quality of the underlying data representation. We propose the $\text{DeepSI}_{\text{finetune}}$ framework that integrates deep learning into the human-in-the-loop interactive sensemaking pipeline, with two important properties. First, deep learning extracts meaningful representations from raw data, which improves semantic interaction inference. Second, semantic interactions are exploited to fine-tune the deep learning representations, which then further improves semantic interaction inference. This feedback loop between human interaction and deep learning enables efficient learning of user- and task-specific representations. To evaluate the advantage of embedding the deep learning within the semantic interaction loop, we compare $\text{DeepSI}_{\text{finetune}}$ against a state-of-the-art but more basic use of deep learning as only a feature extractor pre-processed outside of the interactive loop. Results of two complementary studies, a human-centered qualitative case study and an algorithm-centered simulation-based quantitative experiment, show that $\text{DeepSI}_{\text{finetune}}$ more accurately captures users' complex mental models with fewer interactions.
3D shape modeling is labor-intensive and time-consuming and requires years of expertise. Recently, 2D sketches and text inputs were considered as conditional modalities to 3D shape generation networks to facilitate 3D shape modeling. However, text does not contain enough fine-grained information and is more suitable to describe a category or appearance rather than geometry, while 2D sketches are ambiguous, and depicting complex 3D shapes in 2D again requires extensive practice. Instead, we explore virtual reality sketches that are drawn directly in 3D. We assume that the sketches are created by novices, without any art training, and aim to reconstruct physically-plausible 3D shapes. Since such sketches are potentially ambiguous, we tackle the problem of the generation of multiple 3D shapes that follow the input sketch structure. Limited in the size of the training data, we carefully design our method, training the model step-by-step and leveraging multi-modal 3D shape representation. To guarantee the plausibility of generated 3D shapes we leverage the normalizing flow that models the distribution of the latent space of 3D shapes. To encourage the fidelity of the generated 3D models to an input sketch, we propose a dedicated loss that we deploy at different stages of the training process. We plan to make our code publicly available.
Large language models (LLM) not only empower multiple language tasks but also serve as a general interface across different spaces. Up to now, it has not been demonstrated yet how to effectively translate the successes of LLMs in the computer vision field to the medical imaging field which involves high-dimensional and multi-modal medical images. In this paper, we report a feasibility study of building a multi-task CT large image-text (LIT) model for lung cancer diagnosis by combining an LLM and a large image model (LIM). Specifically, the LLM and LIM are used as encoders to perceive multi-modal information under task-specific text prompts, which synergizes multi-source information and task-specific and patient-specific priors for optimized diagnostic performance. The key components of our LIT model and associated techniques are evaluated with an emphasis on 3D lung CT analysis. Our initial results show that the LIT model performs multiple medical tasks well, including lung segmentation, lung nodule detection, and lung cancer classification. Active efforts are in progress to develop large image-language models for superior medical imaging in diverse applications and optimal patient outcomes.
Large Language Models (LLMs) have gathered significant attention due to their impressive performance on a variety of tasks. ChatGPT, developed by OpenAI, is a recent addition to the family of language models and is being called a disruptive technology by a few, owing to its human-like text-generation capabilities. Although, many anecdotal examples across the internet have evaluated ChatGPT's strength and weakness, only a few systematic research studies exist. To contribute to the body of literature of systematic research on ChatGPT, we evaluate the performance of ChatGPT on Abstractive Summarization by the means of automated metrics and blinded human reviewers. We also build automatic text classifiers to detect ChatGPT generated summaries. We found that while text classification algorithms can distinguish between real and generated summaries, humans are unable to distinguish between real summaries and those produced by ChatGPT.
In recent years, a significant number of high-quality pretrained models have emerged, greatly impacting Natural Language Understanding (NLU), Natural Language Generation (NLG), and Text Representation tasks. Traditionally, these models are pretrained on custom domain corpora and finetuned for specific tasks, resulting in high costs related to GPU usage and labor. Unfortunately, recent trends in language modeling have shifted towards enhancing performance through scaling, further exacerbating the associated costs. Introducing GUR: a pretraining framework that combines language modeling and contrastive learning objectives in a single training step. We select similar text pairs based on their Longest Common Substring (LCS) from raw unlabeled documents and train the model using masked language modeling and unsupervised contrastive learning. The resulting model, GUR, achieves impressive results without any labeled training data, outperforming all other pretrained baselines as a retriever at the recall benchmark in a zero-shot setting. Additionally, GUR maintains its language modeling ability, as demonstrated in our ablation experiment. Our code is available at \url{https://github.com/laohur/GUR}.
Tabular data is often hidden in text, particularly in medical diagnostic reports. Traditional machine learning (ML) models designed to work with tabular data, cannot effectively process information in such form. On the other hand, large language models (LLMs) which excel at textual tasks, are probably not the best tool for modeling tabular data. Therefore, we propose a novel, simple, and effective methodology for extracting structured tabular data from textual medical reports, called TEMED-LLM. Drawing upon the reasoning capabilities of LLMs, TEMED-LLM goes beyond traditional extraction techniques, accurately inferring tabular features, even when their names are not explicitly mentioned in the text. This is achieved by combining domain-specific reasoning guidelines with a proposed data validation and reasoning correction feedback loop. By applying interpretable ML models such as decision trees and logistic regression over the extracted and validated data, we obtain end-to-end interpretable predictions. We demonstrate that our approach significantly outperforms state-of-the-art text classification models in medical diagnostics. Given its predictive performance, simplicity, and interpretability, TEMED-LLM underscores the potential of leveraging LLMs to improve the performance and trustworthiness of ML models in medical applications.
Recent advances in zero-shot learning have enabled the use of paired image-text data to replace structured labels, replacing the need for expert annotated datasets. Models such as CLIP-based CheXzero utilize these advancements in the domain of chest X-ray interpretation. We hypothesize that domain pre-trained models such as CXR-BERT, BlueBERT, and ClinicalBERT offer the potential to improve the performance of CLIP-like models with specific domain knowledge by replacing BERT weights at the cost of breaking the original model's alignment. We evaluate the performance of zero-shot classification models with domain-specific pre-training for detecting low-prevalence pathologies. Even though replacing the weights of the original CLIP-BERT degrades model performance on commonly found pathologies, we show that pre-trained text towers perform exceptionally better on low-prevalence diseases. This motivates future ensemble models with a combination of differently trained language models for maximal performance.
Large pre-trained language models (PLMs) have shown remarkable performance across various natural language understanding (NLU) tasks, particularly in low-resource settings. Nevertheless, their potential in Automatic Speech Recognition (ASR) remains largely unexplored. This study investigates the potential usage of PLMs for language modelling in ASR. We compare the application of large-scale text sampling and probability conversion for approximating GPT-2 into an n-gram model. Furthermore, we introduce a vocabulary-restricted decoding method for random sampling, and evaluate the effects of domain difficulty and data size on the usability of generated text. Our findings across eight domain-specific corpora support the use of sampling-based approximation and show that interpolating with a large sampled corpus improves test perplexity over a baseline trigram by 15%. Our vocabulary-restricted decoding method pushes this improvement further by 5% in domain-specific settings.