Knowledge graphs (KGs) have emerged as a powerful framework for representing and integrating complex biomedical information. However, assembling KGs from diverse sources remains a significant challenge in several aspects, including entity alignment, scalability, and the need for continuous updates to keep pace with scientific advancements. Moreover, the representative power of KGs is often limited by the scarcity of multi-modal data integration. To overcome these challenges, we propose Know2BIO, a general-purpose heterogeneous KG benchmark for the biomedical domain. Know2BIO integrates data from 30 diverse sources, capturing intricate relationships across 11 biomedical categories. It currently consists of ~219,000 nodes and ~6,200,000 edges. Know2BIO is capable of user-directed automated updating to reflect the latest knowledge in biomedical science. Furthermore, Know2BIO is accompanied by multi-modal data: node features including text descriptions, protein and compound sequences and structures, enabling the utilization of emerging natural language processing methods and multi-modal data integration strategies. We evaluate KG representation models on Know2BIO, demonstrating its effectiveness as a benchmark for KG representation learning in the biomedical field. Data and source code of Know2BIO are available at https://github.com/Yijia-Xiao/Know2BIO/.
This paper addresses the distributed online control problem over a network of linear time-invariant (LTI) systems (with possibly unknown dynamics) in the presence of adversarial perturbations. There exists a global network cost that is characterized by a time-varying convex function, which evolves in an adversarial manner and is sequentially and partially observed by local agents. The goal of each agent is to generate a control sequence that can compete with the best centralized control policy in hindsight, which has access to the global cost. This problem is formulated as a regret minimization. For the case of known dynamics, we propose a fully distributed disturbance feedback controller that guarantees a regret bound of $O(\sqrt{T}\log T)$, where $T$ is the time horizon. For the unknown dynamics case, we design a distributed explore-then-commit approach, where in the exploration phase all agents jointly learn the system dynamics, and in the learning phase our proposed control algorithm is applied using each agent system estimate. We establish a regret bound of $O(T^{2/3} \text{poly}(\log T))$ for this setting.
Recent years have witnessed remarkable progress in the development of large vision-language models (LVLMs). Benefiting from the strong language backbones and efficient cross-modal alignment strategies, LVLMs exhibit surprising capabilities to perceive visual signals and perform visually grounded reasoning. However, the capabilities of LVLMs have not been comprehensively and quantitatively evaluate. Most existing multi-modal benchmarks require task-oriented input-output formats, posing great challenges to automatically assess the free-form text output of LVLMs. To effectively leverage the annotations available in existing benchmarks and reduce the manual effort required for constructing new benchmarks, we propose to re-formulate existing benchmarks into unified LVLM-compatible formats. Through systematic data collection and reformulation, we present the ReForm-Eval benchmark, offering substantial data for evaluating various capabilities of LVLMs. Based on ReForm-Eval, we conduct extensive experiments, thoroughly analyze the strengths and weaknesses of existing LVLMs, and identify the underlying factors. Our benchmark and evaluation framework will be open-sourced as a cornerstone for advancing the development of LVLMs.
In this work, we present a web application named DBLPLink, which performs entity linking over the DBLP scholarly knowledge graph. DBLPLink uses text-to-text pre-trained language models, such as T5, to produce entity label spans from an input text question. Entity candidates are fetched from a database based on the labels, and an entity re-ranker sorts them based on entity embeddings, such as TransE, DistMult and ComplEx. The results are displayed so that users may compare and contrast the results between T5-small, T5-base and the different KG embeddings used. The demo can be accessed at https://ltdemos.informatik.uni-hamburg.de/dblplink/.
Strong inductive biases enable learning from little data and help generalization outside of the training distribution. Popular neural architectures such as Transformers lack strong structural inductive biases for seq2seq NLP tasks on their own. Consequently, they struggle with systematic generalization beyond the training distribution, e.g. with extrapolating to longer inputs, even when pre-trained on large amounts of text. We show how a structural inductive bias can be injected into a seq2seq model by pre-training it to simulate structural transformations on synthetic data. Specifically, we inject an inductive bias towards Finite State Transducers (FSTs) into a Transformer by pre-training it to simulate FSTs given their descriptions. Our experiments show that our method imparts the desired inductive bias, resulting in improved systematic generalization and better few-shot learning for FST-like tasks.
Large language models (LLMs) have demonstrated strong capabilities in various aspects. However, when applying them to the highly specialized, safe-critical legal domain, it is unclear how much legal knowledge they possess and whether they can reliably perform legal-related tasks. To address this gap, we propose a comprehensive evaluation benchmark LawBench. LawBench has been meticulously crafted to have precise assessment of the LLMs' legal capabilities from three cognitive levels: (1) Legal knowledge memorization: whether LLMs can memorize needed legal concepts, articles and facts; (2) Legal knowledge understanding: whether LLMs can comprehend entities, events and relationships within legal text; (3) Legal knowledge applying: whether LLMs can properly utilize their legal knowledge and make necessary reasoning steps to solve realistic legal tasks. LawBench contains 20 diverse tasks covering 5 task types: single-label classification (SLC), multi-label classification (MLC), regression, extraction and generation. We perform extensive evaluations of 51 LLMs on LawBench, including 20 multilingual LLMs, 22 Chinese-oriented LLMs and 9 legal specific LLMs. The results show that GPT-4 remains the best-performing LLM in the legal domain, surpassing the others by a significant margin. While fine-tuning LLMs on legal specific text brings certain improvements, we are still a long way from obtaining usable and reliable LLMs in legal tasks. All data, model predictions and evaluation code are released in https://github.com/open-compass/LawBench/. We hope this benchmark provides in-depth understanding of the LLMs' domain-specified capabilities and speed up the development of LLMs in the legal domain.
Economic Policy Uncertainty (EPU) represents the uncertainty realized by the investors during economic policy alterations. EPU is a critical indicator in economic studies to predict future investments, the unemployment rate, and recessions. EPU values can be estimated based on financial parameters directly or implied uncertainty indirectly using the text mining methods. Although EPU is a well-studied topic within the economy, the methods utilized to measure it are understudied. In this article, we define the EPU briefly and review the methods used to measure the EPU, and survey the areas influenced by the changes in EPU level. We divide the EPU measurement methods into three major groups with respect to their input data. Examples of each group of methods are enlisted, and the pros and cons of the groups are discussed. Among the EPU measures, text mining-based ones are dominantly studied. These methods measure the realized uncertainty by taking into account the uncertainty represented in the news and publicly available sources of financial information. Finally, we survey the research areas that rely on measuring the EPU index with the hope that studying the impacts of uncertainty would attract further attention of researchers from various research fields. In addition, we propose a list of future research approaches focusing on measuring EPU using textual material.
Over decades, neuroscience has accumulated a wealth of research results in the text modality that can be used to explore cognitive processes. Meta-analysis is a typical method that successfully establishes a link from text queries to brain activation maps using these research results, but it still relies on an ideal query environment. In practical applications, text queries used for meta-analyses may encounter issues such as semantic redundancy and ambiguity, resulting in an inaccurate mapping to brain images. On the other hand, large language models (LLMs) like ChatGPT have shown great potential in tasks such as context understanding and reasoning, displaying a high degree of consistency with human natural language. Hence, LLMs could improve the connection between text modality and neuroscience, resolving existing challenges of meta-analyses. In this study, we propose a method called Chat2Brain that combines LLMs to basic text-2-image model, known as Text2Brain, to map open-ended semantic queries to brain activation maps in data-scarce and complex query environments. By utilizing the understanding and reasoning capabilities of LLMs, the performance of the mapping model is optimized by transferring text queries to semantic queries. We demonstrate that Chat2Brain can synthesize anatomically plausible neural activation patterns for more complex tasks of text queries.
Large datasets, such as LAION-5B, contain a diverse distribution of images shared online. However, extraction of domain-specific subsets of large image corpora is challenging. The extraction approach based on an anchor dataset, combined with further filtering, is proposed here and demonstrated for the domain of satellite imagery. This results in the release of LAION-EO, a dataset sourced from the web containing pairs of text and satellite images in high (pixel-wise) resolution. The paper outlines the acquisition procedure as well as some of the features of the dataset.
In-context learning (ICL) using large language models for tasks with many labels is challenging due to the limited context window, which makes it difficult to fit a sufficient number of examples in the prompt. In this paper, we use a pre-trained dense retrieval model to bypass this limitation, giving the model only a partial view of the full label space for each inference call. Testing with recent open-source LLMs (OPT, LLaMA), we set new state of the art performance in few-shot settings for three common intent classification datasets, with no finetuning. We also surpass fine-tuned performance on fine-grained sentiment classification in certain cases. We analyze the performance across number of in-context examples and different model scales, showing that larger models are necessary to effectively and consistently make use of larger context lengths for ICL. By running several ablations, we analyze the model's use of: a) the similarity of the in-context examples to the current input, b) the semantic content of the class names, and c) the correct correspondence between examples and labels. We demonstrate that all three are needed to varying degrees depending on the domain, contrary to certain recent works.