Harmonized Spatial and Spectral Learning for Robust and Generalized Medical Image Segmentation

Deep learning has demonstrated remarkable achievements in medical image segmentation. However, prevailing deep learning models struggle with poor generalization due to (i) intra-class variations, where the same class appears differently in different samples, and (ii) inter-class independence, resulting in difficulties capturing intricate relationships between distinct objects, leading to higher false negative cases. This paper presents a novel approach that synergies spatial and spectral representations to enhance domain-generalized medical image segmentation. We introduce the innovative Spectral Correlation Coefficient objective to improve the model's capacity to capture middle-order features and contextual long-range dependencies. This objective complements traditional spatial objectives by incorporating valuable spectral information. Extensive experiments reveal that optimizing this objective with existing architectures like UNet and TransUNet significantly enhances generalization, interpretability, and noise robustness, producing more confident predictions. For instance, in cardiac segmentation, we observe a 0.81 pp and 1.63 pp (pp = percentage point) improvement in DSC over UNet and TransUNet, respectively. Our interpretability study demonstrates that, in most tasks, objectives optimized with UNet outperform even TransUNet by introducing global contextual information alongside local details. These findings underscore the versatility and effectiveness of our proposed method across diverse imaging modalities and medical domains.

Attention-Based Recurrent Neural Network For Automatic Behavior Laying Hen Recognition

One of the interests of modern poultry farming is the vocalization of laying hens which contain very useful information on health behavior. This information is used as health and well-being indicators that help breeders better monitor laying hens, which involves early detection of problems for rapid and more effective intervention. In this work, we focus on the sound analysis for the recognition of the types of calls of the laying hens in order to propose a robust system of characterization of their behavior for a better monitoring. To do this, we first collected and annotated laying hen call signals, then designed an optimal acoustic characterization based on the combination of time and frequency domain features. We then used these features to build the multi-label classification models based on recurrent neural network to assign a semantic class to the vocalization that characterize the laying hen behavior. The results show an overall performance with our model based on the combination of time and frequency domain features that obtained the highest F1-score (F1=92.75) with a gain of 17% on the models using the frequency domain features and of 8% on the compared approaches from the litterature.

Dual-Domain Coarse-to-Fine Progressive Estimation Network for Simultaneous Denoising, Limited-View Reconstruction, and Attenuation Correction of Cardiac SPECT

Single-Photon Emission Computed Tomography (SPECT) is widely applied for the diagnosis of coronary artery diseases. Low-dose (LD) SPECT aims to minimize radiation exposure but leads to increased image noise. Limited-view (LV) SPECT, such as the latest GE MyoSPECT ES system, enables accelerated scanning and reduces hardware expenses but degrades reconstruction accuracy. Additionally, Computed Tomography (CT) is commonly used to derive attenuation maps ($\mu$-maps) for attenuation correction (AC) of cardiac SPECT, but it will introduce additional radiation exposure and SPECT-CT misalignments. Although various methods have been developed to solely focus on LD denoising, LV reconstruction, or CT-free AC in SPECT, the solution for simultaneously addressing these tasks remains challenging and under-explored. Furthermore, it is essential to explore the potential of fusing cross-domain and cross-modality information across these interrelated tasks to further enhance the accuracy of each task. Thus, we propose a Dual-Domain Coarse-to-Fine Progressive Network (DuDoCFNet), a multi-task learning method for simultaneous LD denoising, LV reconstruction, and CT-free $\mu$-map generation of cardiac SPECT. Paired dual-domain networks in DuDoCFNet are cascaded using a multi-layer fusion mechanism for cross-domain and cross-modality feature fusion. Two-stage progressive learning strategies are applied in both projection and image domains to achieve coarse-to-fine estimations of SPECT projections and CT-derived $\mu$-maps. Our experiments demonstrate DuDoCFNet's superior accuracy in estimating projections, generating $\mu$-maps, and AC reconstructions compared to existing single- or multi-task learning methods, under various iterations and LD levels. The source code of this work is available at https://github.com/XiongchaoChen/DuDoCFNet-MultiTask.

DengueNet: Dengue Prediction using Spatiotemporal Satellite Imagery for Resource-Limited Countries

Dengue fever presents a substantial challenge in developing countries where sanitation infrastructure is inadequate. The absence of comprehensive healthcare systems exacerbates the severity of dengue infections, potentially leading to life-threatening circumstances. Rapid response to dengue outbreaks is also challenging due to limited information exchange and integration. While timely dengue outbreak forecasts have the potential to prevent such outbreaks, the majority of dengue prediction studies have predominantly relied on data that impose significant burdens on individual countries for collection. In this study, our aim is to improve health equity in resource-constrained countries by exploring the effectiveness of high-resolution satellite imagery as a nontraditional and readily accessible data source. By leveraging the wealth of publicly available and easily obtainable satellite imagery, we present a scalable satellite extraction framework based on Sentinel Hub, a cloud-based computing platform. Furthermore, we introduce DengueNet, an innovative architecture that combines Vision Transformer, Radiomics, and Long Short-term Memory to extract and integrate spatiotemporal features from satellite images. This enables dengue predictions on an epi-week basis. To evaluate the effectiveness of our proposed method, we conducted experiments on five municipalities in Colombia. We utilized a dataset comprising 780 high-resolution Sentinel-2 satellite images for training and evaluation. The performance of DengueNet was assessed using the mean absolute error (MAE) metric. Across the five municipalities, DengueNet achieved an average MAE of 43.92. Our findings strongly support the efficacy of satellite imagery as a valuable resource for dengue prediction, particularly in informing public health policies within countries where manually collected data is scarce and dengue virus prevalence is severe.

S3M: Semantic Segmentation Sparse Mapping for UAVs with RGB-D Camera

Unmanned Aerial Vehicles (UAVs) hold immense potential for critical applications, such as search and rescue operations, where accurate perception of indoor environments is paramount. However, the concurrent amalgamation of localization, 3D reconstruction, and semantic segmentation presents a notable hurdle, especially in the context of UAVs equipped with constrained power and computational resources. This paper presents a novel approach to address challenges in semantic information extraction and utilization within UAV operations. Our system integrates state-of-the-art visual SLAM to estimate a comprehensive 6-DoF pose and advanced object segmentation methods at the back end. To improve the computational and storage efficiency of the framework, we adopt a streamlined voxel-based 3D map representation - OctoMap to build a working system. Furthermore, the fusion algorithm is incorporated to obtain the semantic information of each frame from the front-end SLAM task, and the corresponding point. By leveraging semantic information, our framework enhances the UAV's ability to perceive and navigate through indoor spaces, addressing challenges in pose estimation accuracy and uncertainty reduction. Through Gazebo simulations, we validate the efficacy of our proposed system and successfully embed our approach into a Jetson Xavier AGX unit for real-world applications.

Understanding Probe Behaviors through Variational Bounds of Mutual Information

With the success of self-supervised representations, researchers seek a better understanding of the information encapsulated within a representation. Among various interpretability methods, we focus on classification-based linear probing. We aim to foster a solid understanding and provide guidelines for linear probing by constructing a novel mathematical framework leveraging information theory. First, we connect probing with the variational bounds of mutual information (MI) to relax the probe design, equating linear probing with fine-tuning. Then, we investigate empirical behaviors and practices of probing through our mathematical framework. We analyze the layer-wise performance curve being convex, which seemingly violates the data processing inequality. However, we show that the intermediate representations can have the biggest MI estimate because of the tradeoff between better separability and decreasing MI. We further suggest that the margin of linearly separable representations can be a criterion for measuring the "goodness of representation." We also compare accuracy with MI as the measuring criteria. Finally, we empirically validate our claims by observing the self-supervised speech models on retaining word and phoneme information.

Exploring Color Invariance through Image-Level Ensemble Learning

In the field of computer vision, the persistent presence of color bias, resulting from fluctuations in real-world lighting and camera conditions, presents a substantial challenge to the robustness of models. This issue is particularly pronounced in complex wide-area surveillance scenarios, such as person re-identification and industrial dust segmentation, where models often experience a decline in performance due to overfitting on color information during training, given the presence of environmental variations. Consequently, there is a need to effectively adapt models to cope with the complexities of camera conditions. To address this challenge, this study introduces a learning strategy named Random Color Erasing, which draws inspiration from ensemble learning. This strategy selectively erases partial or complete color information in the training data without disrupting the original image structure, thereby achieving a balanced weighting of color features and other features within the neural network. This approach mitigates the risk of overfitting and enhances the model's ability to handle color variation, thereby improving its overall robustness. The approach we propose serves as an ensemble learning strategy, characterized by robust interpretability. A comprehensive analysis of this methodology is presented in this paper. Across various tasks such as person re-identification and semantic segmentation, our approach consistently improves strong baseline methods. Notably, in comparison to existing methods that prioritize color robustness, our strategy significantly enhances performance in cross-domain scenarios. The code available at \url{https://github.com/layumi/Person\_reID\_baseline\_pytorch/blob/master/random\_erasing.py} or \url{https://github.com/finger-monkey/Data-Augmentation}.

RAD-DINO: Exploring Scalable Medical Image Encoders Beyond Text Supervision

Language-supervised pre-training has proven to be a valuable method for extracting semantically meaningful features from images, serving as a foundational element in multimodal systems within the computer vision and medical imaging domains. However, resulting features are limited by the information contained within the text. This is particularly problematic in medical imaging, where radiologists' written findings focus on specific observations; a challenge compounded by the scarcity of paired imaging-text data due to concerns over leakage of personal health information. In this work, we fundamentally challenge the prevailing reliance on language supervision for learning general purpose biomedical imaging encoders. We introduce RAD-DINO, a biomedical image encoder pre-trained solely on unimodal biomedical imaging data that obtains similar or greater performance than state-of-the-art biomedical language supervised models on a diverse range of benchmarks. Specifically, the quality of learned representations is evaluated on standard imaging tasks (classification and semantic segmentation), and a vision-language alignment task (text report generation from images). To further demonstrate the drawback of language supervision, we show that features from RAD-DINO correlate with other medical records (e.g., sex or age) better than language-supervised models, which are generally not mentioned in radiology reports. Finally, we conduct a series of ablations determining the factors in RAD-DINO's performance; notably, we observe that RAD-DINO's downstream performance scales well with the quantity and diversity of training data, demonstrating that image-only supervision is a scalable approach for training a foundational biomedical image encoder.

Local Agnostic Video Explanations: a Study on the Applicability of Removal-Based Explanations to Video

Explainable artificial intelligence techniques are becoming increasingly important with the rise of deep learning applications in various domains. These techniques aim to provide a better understanding of complex "black box" models and enhance user trust while maintaining high learning performance. While many studies have focused on explaining deep learning models in computer vision for image input, video explanations remain relatively unexplored due to the temporal dimension's complexity. In this paper, we present a unified framework for local agnostic explanations in the video domain. Our contributions include: (1) Extending a fine-grained explanation framework tailored for computer vision data, (2) Adapting six existing explanation techniques to work on video data by incorporating temporal information and enabling local explanations, and (3) Conducting an evaluation and comparison of the adapted explanation methods using different models and datasets. We discuss the possibilities and choices involved in the removal-based explanation process for visual data. The adaptation of six explanation methods for video is explained, with comparisons to existing approaches. We evaluate the performance of the methods using automated metrics and user-based evaluation, showing that 3D RISE, 3D LIME, and 3D Kernel SHAP outperform other methods. By decomposing the explanation process into manageable steps, we facilitate the study of each choice's impact and allow for further refinement of explanation methods to suit specific datasets and models.

Text Embedding Inversion Attacks on Multilingual Language Models

Representing textual information as real-numbered embeddings has become the norm in NLP. Moreover, with the rise of public interest in large language models (LLMs), Embeddings as a Service (EaaS) has rapidly gained traction as a business model. This is not without outstanding security risks, as previous research has demonstrated that sensitive data can be reconstructed from embeddings, even without knowledge of the underlying model that generated them. However, such work is limited by its sole focus on English, leaving all other languages vulnerable to attacks by malicious actors. %As many international and multilingual companies leverage EaaS, there is an urgent need for research into multilingual LLM security. To this end, this work investigates LLM security from the perspective of multilingual embedding inversion. Concretely, we define the problem of black-box multilingual and cross-lingual inversion attacks, with special attention to a cross-domain scenario. Our findings reveal that multilingual models are potentially more vulnerable to inversion attacks than their monolingual counterparts. This stems from the reduced data requirements for achieving comparable inversion performance in settings where the underlying language is not known a-priori. To our knowledge, this work is the first to delve into multilinguality within the context of inversion attacks, and our findings highlight the need for further investigation and enhanced defenses in the area of NLP Security.