Parameter prediction is essential for many applications, facilitating insightful interpretation and decision-making. However, in many real life domains, such as power systems, medicine, and engineering, it can be very expensive to acquire ground truth labels for certain datasets as they may require extensive and expensive laboratory testing. In this work, we introduce a semi-supervised learning approach based on topological projections in self-organizing maps (SOMs), which significantly reduces the required number of labeled data points to perform parameter prediction, effectively exploiting information contained in large unlabeled datasets. Our proposed method first trains SOMs on unlabeled data and then a minimal number of available labeled data points are ultimately assigned to key best matching units (BMU). The values estimated for newly-encountered data points are computed utilizing the average of the $n$ closest labeled data points in the SOM's U-matrix in tandem with a topological shortest path distance calculation scheme. Our results indicate that the proposed semi-supervised model significantly outperforms traditional regression techniques, including linear and polynomial regression, Gaussian process regression, K-nearest neighbors, as well as various deep neural network models.
Estimating the individual treatment effect (ITE) from observational data is a crucial research topic that holds significant value across multiple domains. How to identify hidden confounders poses a key challenge in ITE estimation. Recent studies have incorporated the structural information of social networks to tackle this challenge, achieving notable advancements. However, these methods utilize graph neural networks to learn the representation of hidden confounders in Euclidean space, disregarding two critical issues: (1) the social networks often exhibit a scalefree structure, while Euclidean embeddings suffer from high distortion when used to embed such graphs, and (2) each ego-centric network within a social network manifests a treatment-related characteristic, implying significant patterns of hidden confounders. To address these issues, we propose a novel method called Treatment-Aware Hyperbolic Representation Learning (TAHyper). Firstly, TAHyper employs the hyperbolic space to encode the social networks, thereby effectively reducing the distortion of confounder representation caused by Euclidean embeddings. Secondly, we design a treatment-aware relationship identification module that enhances the representation of hidden confounders by identifying whether an individual and her neighbors receive the same treatment. Extensive experiments on two benchmark datasets are conducted to demonstrate the superiority of our method.
Large language models (LLMs) have demonstrated impressive capabilities in various natural language processing tasks. Despite this, their application to information retrieval (IR) tasks is still challenging due to the infrequent occurrence of many IR-specific concepts in natural language. While prompt-based methods can provide task descriptions to LLMs, they often fall short in facilitating comprehensive understanding and execution of IR tasks, thereby limiting LLMs' applicability. To address this gap, in this work, we explore the potential of instruction tuning to enhance LLMs' proficiency in IR tasks. We introduce a novel instruction tuning dataset, INTERS, encompassing 21 tasks across three fundamental IR categories: query understanding, document understanding, and query-document relationship understanding. The data are derived from 43 distinct datasets with manually written templates. Our empirical results reveal that INTERS significantly boosts the performance of various publicly available LLMs, such as LLaMA, Mistral, and Phi, in search-related tasks. Furthermore, we conduct a comprehensive analysis to ascertain the effects of base model selection, instruction design, volume of instructions, and task variety on performance. We make our dataset and the models fine-tuned on it publicly accessible at https://github.com/DaoD/INTERS.
Instance-aware embeddings predicted by deep neural networks have revolutionized biomedical instance segmentation, but its resource requirements are substantial. Knowledge distillation offers a solution by transferring distilled knowledge from heavy teacher networks to lightweight yet high-performance student networks. However, existing knowledge distillation methods struggle to extract knowledge for distinguishing instances and overlook global relation information. To address these challenges, we propose a graph relation distillation approach for efficient biomedical instance segmentation, which considers three essential types of knowledge: instance-level features, instance relations, and pixel-level boundaries. We introduce two graph distillation schemes deployed at both the intra-image level and the inter-image level: instance graph distillation (IGD) and affinity graph distillation (AGD). IGD constructs a graph representing instance features and relations, transferring these two types of knowledge by enforcing instance graph consistency. AGD constructs an affinity graph representing pixel relations to capture structured knowledge of instance boundaries, transferring boundary-related knowledge by ensuring pixel affinity consistency. Experimental results on a number of biomedical datasets validate the effectiveness of our approach, enabling student models with less than $ 1\%$ parameters and less than $10\%$ inference time while achieving promising performance compared to teacher models.
Humans possess the capability to comprehend diverse modalities and seamlessly transfer information between them. In this work, we introduce ModaVerse, a Multi-modal Large Language Model (MLLM) capable of comprehending and transforming content across various modalities including images, videos, and audio. Predominant MLLM frameworks have largely relied on the alignment of latent spaces of textual and non-textual features. This alignment process, which synchronizes a language model trained on textual data with encoders and decoders trained on multi-modal data, often necessitates extensive training of several projection layers in multiple stages. Inspired by LLM-as-agent methodologies, we propose a novel Input/Output (I/O) alignment mechanism that operates directly at the level of natural language. It aligns the LLM's output with the input of generative models, avoiding the complexities associated with latent feature alignments, and simplifying the multiple training stages of existing MLLMs into a single, efficient process. This conceptual advancement leads to significant reductions in both data and computational costs. By conducting experiments on several benchmarks, we demonstrate that our approach attains comparable performance with the state of the art while achieving considerable efficiencies in data usage and training duration.
Respiratory rate (RR) serves as an indicator of various medical conditions, such as cardiovascular diseases and sleep disorders. These RR estimation methods were mostly designed for finger-based PPG collected from subjects in stationary situations (e.g., in hospitals). In contrast to finger-based PPG signals, wrist-based PPG are more susceptible to noise, particularly in their low frequency range, which includes respiratory information. Therefore, the existing methods struggle to accurately extract RR when PPG data are collected from wrist area under free-living conditions. The increasing popularity of smartwatches, equipped with various sensors including PPG, has prompted the need for a robust RR estimation method. In this paper, we propose a convolutional neural network-based approach to extract RR from PPG, accelerometer, and gyroscope signals captured via smartwatches. Our method, including a dilated residual inception module and 1D convolutions, extract the temporal information from the signals, enabling RR estimation. Our method is trained and tested using data collected from 36 subjects under free-living conditions for one day using Samsung Gear Sport watches. For evaluation, we compare the proposed method with four state-of-the-art RR estimation methods. The RR estimates are compared with RR references obtained from a chest-band device. The results show that our method outperforms the existing methods with the Mean-Absolute-Error and Root-Mean-Square-Error of 1.85 and 2.34, while the best results obtained by the other methods are 2.41 and 3.29, respectively. Moreover, compared to the other methods, the absolute error distribution of our method was narrow (with the lowest median), indicating a higher level of agreement between the estimated and reference RR values.
Diabetic Retinopathy (DR), an ocular complication of diabetes, is a leading cause of blindness worldwide. Traditionally, DR is monitored using Color Fundus Photography (CFP), a widespread 2-D imaging modality. However, DR classifications based on CFP have poor predictive power, resulting in suboptimal DR management. Optical Coherence Tomography Angiography (OCTA) is a recent 3-D imaging modality offering enhanced structural and functional information (blood flow) with a wider field of view. This paper investigates automatic DR severity assessment using 3-D OCTA. A straightforward solution to this task is a 3-D neural network classifier. However, 3-D architectures have numerous parameters and typically require many training samples. A lighter solution consists in using 2-D neural network classifiers processing 2-D en-face (or frontal) projections and/or 2-D cross-sectional slices. Such an approach mimics the way ophthalmologists analyze OCTA acquisitions: 1) en-face flow maps are often used to detect avascular zones and neovascularization, and 2) cross-sectional slices are commonly analyzed to detect macular edemas, for instance. However, arbitrary data reduction or selection might result in information loss. Two complementary strategies are thus proposed to optimally summarize OCTA volumes with 2-D images: 1) a parametric en-face projection optimized through deep learning and 2) a cross-sectional slice selection process controlled through gradient-based attribution. The full summarization and DR classification pipeline is trained from end to end. The automatic 2-D summary can be displayed in a viewer or printed in a report to support the decision. We show that the proposed 2-D summarization and classification pipeline outperforms direct 3-D classification with the advantage of improved interpretability.
In standard hospital blood tests, the traditional process requires doctors to manually isolate leukocytes from microscopic images of patients' blood using microscopes. These isolated leukocytes are then categorized via automatic leukocyte classifiers to determine the proportion and volume of different types of leukocytes present in the blood samples, aiding disease diagnosis. This methodology is not only time-consuming and labor-intensive, but it also has a high propensity for errors due to factors such as image quality and environmental conditions, which could potentially lead to incorrect subsequent classifications and misdiagnosis. To address these issues, this paper proposes an innovative method of leukocyte detection: the Multi-level Feature Fusion and Deformable Self-attention DETR (MFDS-DETR). To tackle the issue of leukocyte scale disparity, we designed the High-level Screening-feature Fusion Pyramid (HS-FPN), enabling multi-level fusion. This model uses high-level features as weights to filter low-level feature information via a channel attention module and then merges the screened information with the high-level features, thus enhancing the model's feature expression capability. Further, we address the issue of leukocyte feature scarcity by incorporating a multi-scale deformable self-attention module in the encoder and using the self-attention and cross-deformable attention mechanisms in the decoder, which aids in the extraction of the global features of the leukocyte feature maps. The effectiveness, superiority, and generalizability of the proposed MFDS-DETR method are confirmed through comparisons with other cutting-edge leukocyte detection models using the private WBCDD, public LISC and BCCD datasets. Our source code and private WBCCD dataset are available at https://github.com/JustlfC03/MFDS-DETR.
Cooperative multi-agent reinforcement learning is a powerful tool to solve many real-world cooperative tasks, but restrictions of real-world applications may require training the agents in a fully decentralized manner. Due to the lack of information about other agents, it is challenging to derive algorithms that can converge to the optimal joint policy in a fully decentralized setting. Thus, this research area has not been thoroughly studied. In this paper, we seek to systematically review the fully decentralized methods in two settings: maximizing a shared reward of all agents and maximizing the sum of individual rewards of all agents, and discuss open questions and future research directions.
Background: Classification of volatile organic compounds (VOCs) is of interest in many fields. Examples include but are not limited to medicine, detection of explosives, and food quality control. Measurements collected with electronic noses can be used for classification and analysis of VOCs. One type of electronic noses that has seen considerable development in recent years is Differential Mobility Spectrometry (DMS). DMS yields measurements that are visualized as dispersion plots that contain traces, also known as alpha curves. Current methods used for analyzing DMS dispersion plots do not usually utilize the information stored in the continuity of these traces, which suggests that alternative approaches should be investigated. Results: In this work, for the first time, dispersion plots were interpreted as a series of measurements evolving sequentially. Thus, it was hypothesized that time-series classification algorithms can be effective for classification and analysis of dispersion plots. An extensive dataset of 900 dispersion plots for five chemicals measured at five flow rates and two concentrations was collected. The data was used to analyze the classification performance of six algorithms. According to our hypothesis, the highest classification accuracy of 88\% was achieved by a Long-Short Term Memory neural network, which supports our hypothesis. Significance: A new concept for approaching classification tasks of dispersion plots is presented and compared with other well-known classification algorithms. This creates a new angle of view for analysis and classification of the dispersion plots. In addition, a new dataset of dispersion plots is openly shared to public.