Recently, due to the increasing requirements of medical imaging applications and the professional requirements of annotating medical images, few-shot learning has gained increasing attention in the medical image semantic segmentation field. To perform segmentation with limited number of labeled medical images, most existing studies use Proto-typical Networks (PN) and have obtained compelling success. However, these approaches overlook the query image features extracted from the proposed representation network, failing to preserving the spatial connection between query and support images. In this paper, we propose a novel self-supervised few-shot medical image segmentation network and introduce a novel Cycle-Resemblance Attention (CRA) module to fully leverage the pixel-wise relation between query and support medical images. Notably, we first line up multiple attention blocks to refine more abundant relation information. Then, we present CRAPNet by integrating the CRA module with a classic prototype network, where pixel-wise relations between query and support features are well recaptured for segmentation. Extensive experiments on two different medical image datasets, e.g., abdomen MRI and abdomen CT, demonstrate the superiority of our model over existing state-of-the-art methods.
Variational autoencoders (VAEs) are powerful tools for learning latent representations of data used in a wide range of applications. In practice, VAEs usually require multiple training rounds to choose the amount of information the latent variable should retain. This trade-off between the reconstruction error (distortion) and the KL divergence (rate) is typically parameterized by a hyperparameter $\beta$. In this paper, we introduce Multi-Rate VAE (MR-VAE), a computationally efficient framework for learning optimal parameters corresponding to various $\beta$ in a single training run. The key idea is to explicitly formulate a response function that maps $\beta$ to the optimal parameters using hypernetworks. MR-VAEs construct a compact response hypernetwork where the pre-activations are conditionally gated based on $\beta$. We justify the proposed architecture by analyzing linear VAEs and showing that it can represent response functions exactly for linear VAEs. With the learned hypernetwork, MR-VAEs can construct the rate-distortion curve without additional training and can be deployed with significantly less hyperparameter tuning. Empirically, our approach is competitive and often exceeds the performance of multiple $\beta$-VAEs training with minimal computation and memory overheads.
We consider semi-supervised binary classification for applications in which data points are naturally grouped (e.g., survey responses grouped by state) and the labeled data is biased (e.g., survey respondents are not representative of the population). The groups overlap in the feature space and consequently the input-output patterns are related across the groups. To model the inherent structure in such data, we assume the partition-projected class-conditional invariance across groups, defined in terms of the group-agnostic feature space. We demonstrate that under this assumption, the group carries additional information about the class, over the group-agnostic features, with provably improved area under the ROC curve. Further assuming invariance of partition-projected class-conditional distributions across both labeled and unlabeled data, we derive a semi-supervised algorithm that explicitly leverages the structure to learn an optimal, group-aware, probability-calibrated classifier, despite the bias in the labeled data. Experiments on synthetic and real data demonstrate the efficacy of our algorithm over suitable baselines and ablative models, spanning standard supervised and semi-supervised learning approaches, with and without incorporating the group directly as a feature.
Low-dose computed tomography (CT) plays a significant role in reducing the radiation risk in clinical applications. However, lowering the radiation dose will significantly degrade the image quality. With the rapid development and wide application of deep learning, it has brought new directions for the development of low-dose CT imaging algorithms. Therefore, we propose a fully unsupervised one sample diffusion model (OSDM)in projection domain for low-dose CT reconstruction. To extract sufficient prior information from single sample, the Hankel matrix formulation is employed. Besides, the penalized weighted least-squares and total variation are introduced to achieve superior image quality. Specifically, we first train a score-based generative model on one sinogram by extracting a great number of tensors from the structural-Hankel matrix as the network input to capture prior distribution. Then, at the inference stage, the stochastic differential equation solver and data consistency step are performed iteratively to obtain the sinogram data. Finally, the final image is obtained through the filtered back-projection algorithm. The reconstructed results are approaching to the normal-dose counterparts. The results prove that OSDM is practical and effective model for reducing the artifacts and preserving the image quality.
When designing a new API for a large project, developers need to make smart design choices so that their code base can grow sustainably. To ensure that new API components are well designed, developers can learn from existing API components. However, the lack of standardized method for comparing API designs makes this learning process time-consuming and difficult. To address this gap we developed the API-Spector, to the best of our knowledge one of the first API-to-API specification recommendation engines. API-Spector retrieves relevant specification components written in OpenAPI (a widely adopted language used to describe web APIs). API-Spector presents several significant contributions, including: (1) novel methods of processing and extracting key information from OpenAPI specifications, (2) innovative feature extraction techniques that are optimized for the highly technical API specification domain, and (3) a novel log-linear probabilistic model that combines multiple signals to retrieve relevant and high quality OpenAPI specification components given a query specification. We evaluate API-Spector in both quantitative and qualitative tasks and achieve an overall of 91.7% recall@1 and 56.2% F1, which surpasses baseline performance by 15.4% in recall@1 and 3.2% in F1. Overall, API-Spector will allow developers to retrieve relevant OpenAPI specification components from a public or internal database in the early stages of the API development cycle, so that they can learn from existing established examples and potentially identify redundancies in their work. It provides the guidance developers need to accelerate development process and contribute thoughtfully designed APIs that promote code maintainability and quality.
As biometric technology is increasingly deployed, it will be common to replace parts of operational systems with newer designs. The cost and inconvenience of reacquiring enrolled users when a new vendor solution is incorporated makes this approach difficult and many applications will require to deal with information from different sources regularly. These interoperability problems can dramatically affect the performance of biometric systems and thus, they need to be overcome. Here, we describe and evaluate the ATVS-UAM fusion approach submitted to the quality-based evaluation of the 2007 BioSecure Multimodal Evaluation Campaign, whose aim was to compare fusion algorithms when biometric signals were generated using several biometric devices in mismatched conditions. Quality measures from the raw biometric data are available to allow system adjustment to changing quality conditions due to device changes. This system adjustment is referred to as quality-based conditional processing. The proposed fusion approach is based on linear logistic regression, in which fused scores tend to be log-likelihood-ratios. This allows the easy and efficient combination of matching scores from different devices assuming low dependence among modalities. In our system, quality information is used to switch between different system modules depending on the data source (the sensor in our case) and to reject channels with low quality data during the fusion. We compare our fusion approach to a set of rule-based fusion schemes over normalized scores. Results show that the proposed approach outperforms all the rule-based fusion schemes. We also show that with the quality-based channel rejection scheme, an overall improvement of 25% in the equal error rate is obtained.
Many studies have been conducted to improve the efficiency of Transformer from quadric to linear. Among them, the low-rank-based methods aim to learn the projection matrices to compress the sequence length. However, the projection matrices are fixed once they have been learned, which compress sequence length with dedicated coefficients for tokens in the same position. Adopting such input-invariant projections ignores the fact that the most informative part of a sequence varies from sequence to sequence, thus failing to preserve the most useful information that lies in varied positions. In addition, previous efficient Transformers only focus on the influence of sequence length while neglecting the effect of hidden state dimension. To address the aforementioned problems, we present an efficient yet effective attention mechanism, namely the Dynamic Bilinear Low-Rank Attention (DBA), which compresses the sequence length by input-sensitive dynamic projection matrices and achieves linear time and space complexity by jointly optimizing the sequence length and hidden state dimension while maintaining state-of-the-art performance. Specifically, we first theoretically demonstrate that the sequence length can be compressed non-destructively from a novel perspective of information theory, with compression matrices dynamically determined by the input sequence. Furthermore, we show that the hidden state dimension can be approximated by extending the Johnson-Lindenstrauss lemma, optimizing the attention in bilinear form. Theoretical analysis shows that DBA is proficient in capturing high-order relations in cross-attention problems. Experiments over tasks with diverse sequence length conditions show that DBA achieves state-of-the-art performance compared with various strong baselines while maintaining less memory consumption with higher speed.
Handling long texts with structural information and excluding redundancy between summary sentences are essential in extractive document summarization. In this work, we propose GoSum, a novel reinforcement-learning-based extractive model for long-paper summarization. GoSum encodes states by building a heterogeneous graph from different discourse levels for each input document. We evaluate the model on two datasets of scientific articles summarization: PubMed and arXiv where it outperforms all extractive summarization models and most of the strong abstractive baselines.
Patent texts contain a large amount of entity information. Through named entity recognition, intellectual property entity information containing key information can be extracted from it, helping researchers to understand the patent content faster. Therefore, it is difficult for existing named entity extraction methods to make full use of the semantic information at the word level brought about by professional vocabulary changes. This paper proposes a method for extracting intellectual property entities based on Transformer and technical word information , and provides accurate word vector representation in combination with the BERT language method. In the process of word vector generation, the technical word information extracted by IDCNN is added to improve the understanding of intellectual property entities Representation ability. Finally, the Transformer encoder that introduces relative position encoding is used to learn the deep semantic information of the text from the sequence of word vectors, and realize entity label prediction. Experimental results on public datasets and annotated patent datasets show that the method improves the accuracy of entity recognition.
We propose a decoding-based approach to detect context effects on neural codes in longitudinal neural recording data. The approach is agnostic to how information is encoded in neural activity, and can control for a variety of possible confounding factors present in the data. We demonstrate our approach by determining whether it is possible to decode location encoding from prefrontal cortex in the mouse and, further, testing whether the encoding changes due to task engagement.